| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is ygjK [H]
Identifier: 157963962
GI number: 157963962
Start: 5041406
End: 5043571
Strand: Reverse
Name: ygjK [H]
Synonym: Spea_4151
Alternate gene names: 157963962
Gene position: 5043571-5041406 (Counterclockwise)
Preceding gene: 157963963
Following gene: 157963961
Centisome position: 97.47
GC content: 49.54
Gene sequence:
>2166_bases ATGCTGAATTGCCTCTTACTCTGTATCGCTAGCCTCTCTTCGCTTGATTCTGCCGATTATCAAAATCTACTGCCTTATCA AGGCACGCCAACCTCGATGGAGCAGCGTGATAATAAGGGCAATCTCACCATAGGCTCAGTTTATACCGACCAAGGTGCTT GGCATGGTTTTCACCTGCCCGATAATGCCGATTATTACGGCAGCTTTACTGGCCCGCTGTTTATCGCCCAAGAGTACAGC CTGCACTTGAGTGACAGCTTGCAACGTTTGCAGCTGATCAACATAGATAAAGATGAATTTGTGTCACTGGATAGCGCCAG TCGAATCGAGATCTATAGCAGGCCAGACGCCTTAGTACAGTCGTTTACCTGGTCTGATTTTCAACTTAATTTATCTCTCA GCTATAGCGATAATCGCACCGCGGTGATCCGCACCGAGTTAGTTAACCTATCTAACAAGCCTCAAACTTGGCAGCTCGTC TGGCACGGTACACCCTTTAGTTCTCACCCCTCACTTGCCGATTACCGCTTAATCAAACAGGCTGAAGTGAGCGCTAACCA TGTTAGTTGGCAGCTCAATCCAATCATGGAAACTTGGCGAATTCAGCTAGCCGATGCCGAGTATGAGTTGTGGTTCGATC GAGATATGAAGATTACCCTCGATGAGCAATCGGGTTATCGCGCCATTGCTGAGCCCATGATTCTAGATGCGGGGCAGCAG CATACGTTTATATCGGCGCAGCGCTATTTCCACACCCAAGCCGAGCGAACGGCGCATCAAGCGCCCGATTGGAGCAAGAT TGACAGTCAGTTGCTGGATAATCAGGCCAAGTGGCAAGCCAGGCTCGATAGGGCGATCAAAGGAGGAGATAAGAGCTCTC GTCAACTCGCAGTAAAAAGCATGCTAACCCTAGTGCACAATTGGCGCAGTCCGGCGGGCGCGCTACAACATGATGCGATA ACGCCTTCGATTACCTATAAGTGGTTTAACGGTGTATGGGCATGGGATAGCTGGAAGCAAGCCGTCGCCTTAGCGCGATT CGATCCCGAATTAGCCAAGTCTAATGTTTTAGCCATGTTCGATTATCAATTTACGTCGCAGGATCCGCTGAGACCGCAAG ATGCGGGCAATCTTCCCGATGCTATTTTTTATAATAAAGACCGCGAACGTGGTGGTGAGGGCGGCAATTGGAATGAGCGC AATGGTAAGCCACCACTATCCGCTTGGGCCGTGTGGCAAATTTATCTGCAGGATAAAGATGAAGCCTTTCTTAACATTAT GTATCCCAAGCTTGTGGCCTATCACGAGTGGTGGTATCGCAATCGTGACAACAATGATAATGGCCTAGCCGAGTATGGTG CCAATCTCCATCCTATGCACCTCAATGAGGATGGATCGATTAACCCGCAAGCGGTGATCGAAGCCGCAGCTTGGGAGTCG GGGATGGATAATGCGCCGCGCTTCGATATGGATGACGCCTTAGATATATGGCAAAACCGCCAAGGGGGCCAGCTCGTTGG TTATTCTGTATCCCAAGAATCGGTGGATCTTAATGCTTATCTCTATGCGGAGAAACGTTTTCTAGAGCAGATCGCGGCTG TACTCGGCGATGAAAGCGCAGCAGAAAAATGGGACCTTGCAGCCACTCGGCTAGCAAAACAAATTCAGATGCAGATGTAT GATGCCGAGTCAGGCTTTTTCTATGATATTCGTTATACGCCAACCGGTAGCGAGTTGATGGTTAAGCAAGGTAAAGGCGT CGAGGGCTGGATCCCGCTTTGGGCTGGAGCGGCCAGTGAGGCCCAAGCCAAAATTATCGTAGAGCGACATCTTAATGAGA CGCAATTTGGCACCTTAATTCCGTTCCCGACGGTGAGTGCCGATAGTCCTAATTTTGCGGCGGCTAAGTATTGGCGAGGT CCAGTATGGTTAGATCAGGCATTATTCGGTCTACAAGGGGTCGAGCGCTACGGTTATCATGAGCAAGCCCAGAGTTTAGC TAAGCAATTGGTGGTGCAAGGAGAGGGGATCCTTGGGCAGAGTCCAATTCGTGAAAATTATAACCCGCTAACAGGAGAAG GGTTGCACTGCACCAACTTTAGCTGGTCAGCTTCGGTATTGTTGCTCATTTATCAGTCATGGTTAACCGACGTTGGTGAT GAATAG
Upstream 100 bases:
>100_bases GATTGCTATTTTAGTTTGTTAATCTAAAGTTAATCGCGCTTGCAGATTAAATTTTAGCCTGTAATACTTAGGATATTATA TTCAAAAATAACAATAACTC
Downstream 100 bases:
>100_bases TCATGGAGCTTTAATTGCTAACATTATGAAAGTTTGCCAATAATTCTGATGTTTTAAAATAGGCTGCCTAAATACATTAA TTCGACTGTTAATGTTCTAC
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 721; Mature: 721
Protein sequence:
>721_residues MLNCLLLCIASLSSLDSADYQNLLPYQGTPTSMEQRDNKGNLTIGSVYTDQGAWHGFHLPDNADYYGSFTGPLFIAQEYS LHLSDSLQRLQLINIDKDEFVSLDSASRIEIYSRPDALVQSFTWSDFQLNLSLSYSDNRTAVIRTELVNLSNKPQTWQLV WHGTPFSSHPSLADYRLIKQAEVSANHVSWQLNPIMETWRIQLADAEYELWFDRDMKITLDEQSGYRAIAEPMILDAGQQ HTFISAQRYFHTQAERTAHQAPDWSKIDSQLLDNQAKWQARLDRAIKGGDKSSRQLAVKSMLTLVHNWRSPAGALQHDAI TPSITYKWFNGVWAWDSWKQAVALARFDPELAKSNVLAMFDYQFTSQDPLRPQDAGNLPDAIFYNKDRERGGEGGNWNER NGKPPLSAWAVWQIYLQDKDEAFLNIMYPKLVAYHEWWYRNRDNNDNGLAEYGANLHPMHLNEDGSINPQAVIEAAAWES GMDNAPRFDMDDALDIWQNRQGGQLVGYSVSQESVDLNAYLYAEKRFLEQIAAVLGDESAAEKWDLAATRLAKQIQMQMY DAESGFFYDIRYTPTGSELMVKQGKGVEGWIPLWAGAASEAQAKIIVERHLNETQFGTLIPFPTVSADSPNFAAAKYWRG PVWLDQALFGLQGVERYGYHEQAQSLAKQLVVQGEGILGQSPIRENYNPLTGEGLHCTNFSWSASVLLLIYQSWLTDVGD E
Sequences:
>Translated_721_residues MLNCLLLCIASLSSLDSADYQNLLPYQGTPTSMEQRDNKGNLTIGSVYTDQGAWHGFHLPDNADYYGSFTGPLFIAQEYS LHLSDSLQRLQLINIDKDEFVSLDSASRIEIYSRPDALVQSFTWSDFQLNLSLSYSDNRTAVIRTELVNLSNKPQTWQLV WHGTPFSSHPSLADYRLIKQAEVSANHVSWQLNPIMETWRIQLADAEYELWFDRDMKITLDEQSGYRAIAEPMILDAGQQ HTFISAQRYFHTQAERTAHQAPDWSKIDSQLLDNQAKWQARLDRAIKGGDKSSRQLAVKSMLTLVHNWRSPAGALQHDAI TPSITYKWFNGVWAWDSWKQAVALARFDPELAKSNVLAMFDYQFTSQDPLRPQDAGNLPDAIFYNKDRERGGEGGNWNER NGKPPLSAWAVWQIYLQDKDEAFLNIMYPKLVAYHEWWYRNRDNNDNGLAEYGANLHPMHLNEDGSINPQAVIEAAAWES GMDNAPRFDMDDALDIWQNRQGGQLVGYSVSQESVDLNAYLYAEKRFLEQIAAVLGDESAAEKWDLAATRLAKQIQMQMY DAESGFFYDIRYTPTGSELMVKQGKGVEGWIPLWAGAASEAQAKIIVERHLNETQFGTLIPFPTVSADSPNFAAAKYWRG PVWLDQALFGLQGVERYGYHEQAQSLAKQLVVQGEGILGQSPIRENYNPLTGEGLHCTNFSWSASVLLLIYQSWLTDVGD E >Mature_721_residues MLNCLLLCIASLSSLDSADYQNLLPYQGTPTSMEQRDNKGNLTIGSVYTDQGAWHGFHLPDNADYYGSFTGPLFIAQEYS LHLSDSLQRLQLINIDKDEFVSLDSASRIEIYSRPDALVQSFTWSDFQLNLSLSYSDNRTAVIRTELVNLSNKPQTWQLV WHGTPFSSHPSLADYRLIKQAEVSANHVSWQLNPIMETWRIQLADAEYELWFDRDMKITLDEQSGYRAIAEPMILDAGQQ HTFISAQRYFHTQAERTAHQAPDWSKIDSQLLDNQAKWQARLDRAIKGGDKSSRQLAVKSMLTLVHNWRSPAGALQHDAI TPSITYKWFNGVWAWDSWKQAVALARFDPELAKSNVLAMFDYQFTSQDPLRPQDAGNLPDAIFYNKDRERGGEGGNWNER NGKPPLSAWAVWQIYLQDKDEAFLNIMYPKLVAYHEWWYRNRDNNDNGLAEYGANLHPMHLNEDGSINPQAVIEAAAWES GMDNAPRFDMDDALDIWQNRQGGQLVGYSVSQESVDLNAYLYAEKRFLEQIAAVLGDESAAEKWDLAATRLAKQIQMQMY DAESGFFYDIRYTPTGSELMVKQGKGVEGWIPLWAGAASEAQAKIIVERHLNETQFGTLIPFPTVSADSPNFAAAKYWRG PVWLDQALFGLQGVERYGYHEQAQSLAKQLVVQGEGILGQSPIRENYNPLTGEGLHCTNFSWSASVLLLIYQSWLTDVGD E
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789462, Length=789, Percent_Identity=34.3472750316857, Blast_Score=438, Evalue=1e-124,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR001661 [H]
Pfam domain/function: PF01204 Trehalase [H]
EC number: NA
Molecular weight: Translated: 81794; Mature: 81794
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNCLLLCIASLSSLDSADYQNLLPYQGTPTSMEQRDNKGNLTIGSVYTDQGAWHGFHLP CHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHCCCCCCEEEEEEEECCCCCCCCCCC DNADYYGSFTGPLFIAQEYSLHLSDSLQRLQLINIDKDEFVSLDSASRIEIYSRPDALVQ CCCCCCCCCCCCEEEEEEEEEEHHHHHCEEEEECCCHHHHEECCCCCEEEEECCCHHHHH SFTWSDFQLNLSLSYSDNRTAVIRTELVNLSNKPQTWQLVWHGTPFSSHPSLADYRLIKQ HCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH AEVSANHVSWQLNPIMETWRIQLADAEYELWFDRDMKITLDEQSGYRAIAEPMILDAGQQ HHCCCCEEEEEECCCCEEEEEEEECCEEEEEECCCCEEEEECCCCCHHHHCCCEECCCCC HTFISAQRYFHTQAERTAHQAPDWSKIDSQLLDNQAKWQARLDRAIKGGDKSSRQLAVKS CEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHH MLTLVHNWRSPAGALQHDAITPSITYKWFNGVWAWDSWKQAVALARFDPELAKSNVLAMF HHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEECCCCHHHHHHHHHCCHHHHHCCEEEEE DYQFTSQDPLRPQDAGNLPDAIFYNKDRERGGEGGNWNERNGKPPLSAWAVWQIYLQDKD EEEECCCCCCCCCCCCCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC EAFLNIMYPKLVAYHEWWYRNRDNNDNGLAEYGANLHPMHLNEDGSINPQAVIEAAAWES CCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCC GMDNAPRFDMDDALDIWQNRQGGQLVGYSVSQESVDLNAYLYAEKRFLEQIAAVLGDESA CCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHCCCHH AEKWDLAATRLAKQIQMQMYDAESGFFYDIRYTPTGSELMVKQGKGVEGWIPLWAGAASE HHHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCCCCEEEEECCCCCCCCEEEECCCCCC AQAKIIVERHLNETQFGTLIPFPTVSADSPNFAAAKYWRGPVWLDQALFGLQGVERYGYH CHHEEEEECCCCCCCCCEECCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCH EQAQSLAKQLVVQGEGILGQSPIRENYNPLTGEGLHCTNFSWSASVLLLIYQSWLTDVGD HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCC E C >Mature Secondary Structure MLNCLLLCIASLSSLDSADYQNLLPYQGTPTSMEQRDNKGNLTIGSVYTDQGAWHGFHLP CHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHCCCCCCEEEEEEEECCCCCCCCCCC DNADYYGSFTGPLFIAQEYSLHLSDSLQRLQLINIDKDEFVSLDSASRIEIYSRPDALVQ CCCCCCCCCCCCEEEEEEEEEEHHHHHCEEEEECCCHHHHEECCCCCEEEEECCCHHHHH SFTWSDFQLNLSLSYSDNRTAVIRTELVNLSNKPQTWQLVWHGTPFSSHPSLADYRLIKQ HCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH AEVSANHVSWQLNPIMETWRIQLADAEYELWFDRDMKITLDEQSGYRAIAEPMILDAGQQ HHCCCCEEEEEECCCCEEEEEEEECCEEEEEECCCCEEEEECCCCCHHHHCCCEECCCCC HTFISAQRYFHTQAERTAHQAPDWSKIDSQLLDNQAKWQARLDRAIKGGDKSSRQLAVKS CEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHH MLTLVHNWRSPAGALQHDAITPSITYKWFNGVWAWDSWKQAVALARFDPELAKSNVLAMF HHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEECCCCHHHHHHHHHCCHHHHHCCEEEEE DYQFTSQDPLRPQDAGNLPDAIFYNKDRERGGEGGNWNERNGKPPLSAWAVWQIYLQDKD EEEECCCCCCCCCCCCCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC EAFLNIMYPKLVAYHEWWYRNRDNNDNGLAEYGANLHPMHLNEDGSINPQAVIEAAAWES CCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCC GMDNAPRFDMDDALDIWQNRQGGQLVGYSVSQESVDLNAYLYAEKRFLEQIAAVLGDESA CCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHCCCHH AEKWDLAATRLAKQIQMQMYDAESGFFYDIRYTPTGSELMVKQGKGVEGWIPLWAGAASE HHHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCCCCEEEEECCCCCCCCEEEECCCCCC AQAKIIVERHLNETQFGTLIPFPTVSADSPNFAAAKYWRGPVWLDQALFGLQGVERYGYH CHHEEEEECCCCCCCCCEECCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCH EQAQSLAKQLVVQGEGILGQSPIRENYNPLTGEGLHCTNFSWSASVLLLIYQSWLTDVGD HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCC E C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]