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The map label for this gene is yidZ [H]

Identifier: 157963768

GI number: 157963768

Start: 4811857

End: 4812825

Strand: Direct

Name: yidZ [H]

Synonym: Spea_3957

Alternate gene names: 157963768

Gene position: 4811857-4812825 (Clockwise)

Preceding gene: 157963766

Following gene: 157963769

Centisome position: 92.99

GC content: 50.26

Gene sequence:

>969_bases
TTGAAACTAGAAAATCTCGCACGTATCGATCTCAACCTACTGGTTATTCTGCAAGTGCTTTTGGAGGAGCAAAGCGTCAC
CCGTGCCGCCAATCGCCTACACCTTAGTCAGTCTGCTCTGAGTAAGAGCTTAAACCGCTTAAGGGAGACCCTAGGGGATC
CACTTTTCCTGCGCACCGCTCATGGACTTAAGCCAACAGCCCACGCAGTACAGTTAGGCAAGATCCTCCCCCAAAGCCTA
CAAAGCTTGTATCAACTAACACTACCGCCAAGCTTTACGCCCCATAACAGTAACCGTCAGTTTTCATTTGCCATGGTGGA
AAGCGCTTACGAAACTTTGCTGCCTTACTTTATCGGCACCTTACTCAATCGCGCCCCCAACCTTAAGCTCGATAGCTTTG
TATGGAGCGAAAATTCGATGCAGGCGATTCAACAAGGGCAGATTGATTTCGGTATTGCCGGGCGTGAACTGCACCCACAG
TCTGCCTTTCAGGTGGATAGGCTACCCGAAGGCATCGCCCATCAAACCCTGTTTACCGATCATCAGCTGTGTTTGGTTCG
CCAAGATCACCCCATCCTCTCGGCCGTAGCTGCCGGCCATTGGGATCTGACTGTCTATCTCGAGATGTCACATGTGCAGG
TACGCTGCGAAGGCAATGACTGGTGGGCACTGGACTATCATCTGGCCGATTTAGGTCACCATCGCCGTTTAAGCACTATC
GTGCCCGATTTTTATGGCGCTGCGAGTGTTTGTGCCCATAGCGATCTGATTTTTACCCTACCCGCGAGCTTTGCCCAACA
TGCTAAGAAGCTCTATCCCTTAGTCGAGTTACCGCTGCCGATTGAATTTATTCCACTGGCCTACGTACTACTCTGGCATG
AGCGAAGTGCTGAAGATCCAGGCCATGGATGGGTTAAGGAGATTATTTGTGAAAGCGTTGCCAAGGCGTTTTTAAACAGT
CAAAATTGA

Upstream 100 bases:

>100_bases
GATCTTTCTCAGAATTAGGAAAACAGCGCTATAGTAATCAAACTATGGTATGAACAGAAATGATATTATTTCCATTGTGA
ATTTCCACTGAGGAATATCT

Downstream 100 bases:

>100_bases
AGCGAGTTAAATTAGATTAACCTTTATTAACGTGATCTTGGTTCAAATAAACGGCAGTATAATATTCAACAGTTAGCCTT
AAGCATCACGAACAAAAGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKLENLARIDLNLLVILQVLLEEQSVTRAANRLHLSQSALSKSLNRLRETLGDPLFLRTAHGLKPTAHAVQLGKILPQSL
QSLYQLTLPPSFTPHNSNRQFSFAMVESAYETLLPYFIGTLLNRAPNLKLDSFVWSENSMQAIQQGQIDFGIAGRELHPQ
SAFQVDRLPEGIAHQTLFTDHQLCLVRQDHPILSAVAAGHWDLTVYLEMSHVQVRCEGNDWWALDYHLADLGHHRRLSTI
VPDFYGAASVCAHSDLIFTLPASFAQHAKKLYPLVELPLPIEFIPLAYVLLWHERSAEDPGHGWVKEIICESVAKAFLNS
QN

Sequences:

>Translated_322_residues
MKLENLARIDLNLLVILQVLLEEQSVTRAANRLHLSQSALSKSLNRLRETLGDPLFLRTAHGLKPTAHAVQLGKILPQSL
QSLYQLTLPPSFTPHNSNRQFSFAMVESAYETLLPYFIGTLLNRAPNLKLDSFVWSENSMQAIQQGQIDFGIAGRELHPQ
SAFQVDRLPEGIAHQTLFTDHQLCLVRQDHPILSAVAAGHWDLTVYLEMSHVQVRCEGNDWWALDYHLADLGHHRRLSTI
VPDFYGAASVCAHSDLIFTLPASFAQHAKKLYPLVELPLPIEFIPLAYVLLWHERSAEDPGHGWVKEIICESVAKAFLNS
QN
>Mature_322_residues
MKLENLARIDLNLLVILQVLLEEQSVTRAANRLHLSQSALSKSLNRLRETLGDPLFLRTAHGLKPTAHAVQLGKILPQSL
QSLYQLTLPPSFTPHNSNRQFSFAMVESAYETLLPYFIGTLLNRAPNLKLDSFVWSENSMQAIQQGQIDFGIAGRELHPQ
SAFQVDRLPEGIAHQTLFTDHQLCLVRQDHPILSAVAAGHWDLTVYLEMSHVQVRCEGNDWWALDYHLADLGHHRRLSTI
VPDFYGAASVCAHSDLIFTLPASFAQHAKKLYPLVELPLPIEFIPLAYVLLWHERSAEDPGHGWVKEIICESVAKAFLNS
QN

Specific function: Involved in anaerobic NO protection [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=298, Percent_Identity=32.5503355704698, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI87081684, Length=309, Percent_Identity=27.5080906148867, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081766, Length=306, Percent_Identity=27.1241830065359, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1786820, Length=83, Percent_Identity=40.9638554216867, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36270; Mature: 36270

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLENLARIDLNLLVILQVLLEEQSVTRAANRLHLSQSALSKSLNRLRETLGDPLFLRTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
HGLKPTAHAVQLGKILPQSLQSLYQLTLPPSFTPHNSNRQFSFAMVESAYETLLPYFIGT
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHH
LLNRAPNLKLDSFVWSENSMQAIQQGQIDFGIAGRELHPQSAFQVDRLPEGIAHQTLFTD
HHCCCCCCEEHHEEECCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCHHHHHHHHCC
HQLCLVRQDHPILSAVAAGHWDLTVYLEMSHVQVRCEGNDWWALDYHLADLGHHRRLSTI
CCEEEEECCCCHHHHHHCCCCEEEEEEEEEEEEEEECCCCEEEEEEEHHHCCCHHHHHHH
VPDFYGAASVCAHSDLIFTLPASFAQHAKKLYPLVELPLPIEFIPLAYVLLWHERSAEDP
CCCCCCHHHHHHCCCEEEECCHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHCCCCCCC
GHGWVKEIICESVAKAFLNSQN
CCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKLENLARIDLNLLVILQVLLEEQSVTRAANRLHLSQSALSKSLNRLRETLGDPLFLRTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
HGLKPTAHAVQLGKILPQSLQSLYQLTLPPSFTPHNSNRQFSFAMVESAYETLLPYFIGT
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHH
LLNRAPNLKLDSFVWSENSMQAIQQGQIDFGIAGRELHPQSAFQVDRLPEGIAHQTLFTD
HHCCCCCCEEHHEEECCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCHHHHHHHHCC
HQLCLVRQDHPILSAVAAGHWDLTVYLEMSHVQVRCEGNDWWALDYHLADLGHHRRLSTI
CCEEEEECCCCHHHHHHCCCCEEEEEEEEEEEEEEECCCCEEEEEEEHHHCCCHHHHHHH
VPDFYGAASVCAHSDLIFTLPASFAQHAKKLYPLVELPLPIEFIPLAYVLLWHERSAEDP
CCCCCCHHHHHHCCCEEEECCHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHCCCCCCC
GHGWVKEIICESVAKAFLNSQN
CCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA