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The map label for this gene is syrM1 [H]

Identifier: 157963756

GI number: 157963756

Start: 4798113

End: 4799060

Strand: Reverse

Name: syrM1 [H]

Synonym: Spea_3945

Alternate gene names: 157963756

Gene position: 4799060-4798113 (Counterclockwise)

Preceding gene: 157963758

Following gene: 157963752

Centisome position: 92.74

GC content: 49.47

Gene sequence:

>948_bases
ATGGATCTCGCTAAACTCTCTCACATCAGCATGAAGCATCTGATCACCCTGCACGTGATGCTCGATACCCTAAGTGTAAC
CGCCAGTGCCGAGCGCCTGTGTTTGAGTCCATCGTCGGTGAGTAAAACCTTGAGTCAACTTAGGCTCAGTCTCGACGACG
AGTTGTTCTATCGTCACGGTAACAAGCTGGTGGCCACACCGCTGGCTCGCAGGCTTGGGCCGAGTGTGCATCAAATTATC
AATGACATGAATCAGTTGGTCACTCAAGAAGCGTTTAATCCCGCAGAGTATAAGGGGCGTTTCTCCTTAGCGATGCGTGA
AAGCACCTTCGAGTTATTGGCCGCTAAATTCATGGCCCATGTGCTAACGCTTGCACCTAATATTCGTTTAGATATTTTTG
CTAAAGACAGCGTGGGTTTTGAGGGGCTAGTCAAAGGTAACTTAGACTTTATCTTGTTGCCCCACGATAGAAGTCAGCCG
CCGATCTCCCAGCAGCAATTGGTGTGGGAGACCTTACTCAACGACGAGATGGTGTGTCTGATGAATCCGGAGCATCCATT
AGCGAGTCAGGCACAGATCTCTATTGATGATTACCTAAGTTTTAGCCATATCAGTATTAGCGATAGCGACCTAAATACGC
CATTTTTTGAGATGCAGCTAGCCCAGCAGTCACGCAATCGCGCGGTACCTATCTCGGTGGCCGACTTTGGAAGTGCGGCA
CTGCTGTGTCATCACAGTGAGCTGCTGTTTACCTGCTCGCGGCGTTGGGCTGAAACTGCGTTTCAAGCCCAAGGTTTGGT
GACCAAGACGATGCCTTTGGACTATGGCGAGGTGGCCTACAGTTTGGTGTGGCATAAGCAGAGTATGAATGACCCCGCTT
TGCGCTGGTTGTATCAACAGTTGCTGGAGTTTACTCGAATGGAGTTTACTCGAATGGAGTTTCAATAA

Upstream 100 bases:

>100_bases
CCGCAAAGAGATTTGCGTCTATATTCCCGTTTACGACTATATTCTCGTTTACGACTATATTATTCCCGCTTACAAATAGA
CGGCTCTCTTAGGCAGACTT

Downstream 100 bases:

>100_bases
ACTTAACCAAAAGTTTTGGAAACTTGGCCAAAAGTTTATTGGTTCATTGGGTTGAGGGCGCATCAAACTTCGTTTGATAA
AGGTCGTGGCTTTGCCACAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Symbiotic regulator homolog 1 [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MDLAKLSHISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRLSLDDELFYRHGNKLVATPLARRLGPSVHQII
NDMNQLVTQEAFNPAEYKGRFSLAMRESTFELLAAKFMAHVLTLAPNIRLDIFAKDSVGFEGLVKGNLDFILLPHDRSQP
PISQQQLVWETLLNDEMVCLMNPEHPLASQAQISIDDYLSFSHISISDSDLNTPFFEMQLAQQSRNRAVPISVADFGSAA
LLCHHSELLFTCSRRWAETAFQAQGLVTKTMPLDYGEVAYSLVWHKQSMNDPALRWLYQQLLEFTRMEFTRMEFQ

Sequences:

>Translated_315_residues
MDLAKLSHISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRLSLDDELFYRHGNKLVATPLARRLGPSVHQII
NDMNQLVTQEAFNPAEYKGRFSLAMRESTFELLAAKFMAHVLTLAPNIRLDIFAKDSVGFEGLVKGNLDFILLPHDRSQP
PISQQQLVWETLLNDEMVCLMNPEHPLASQAQISIDDYLSFSHISISDSDLNTPFFEMQLAQQSRNRAVPISVADFGSAA
LLCHHSELLFTCSRRWAETAFQAQGLVTKTMPLDYGEVAYSLVWHKQSMNDPALRWLYQQLLEFTRMEFTRMEFQ
>Mature_315_residues
MDLAKLSHISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRLSLDDELFYRHGNKLVATPLARRLGPSVHQII
NDMNQLVTQEAFNPAEYKGRFSLAMRESTFELLAAKFMAHVLTLAPNIRLDIFAKDSVGFEGLVKGNLDFILLPHDRSQP
PISQQQLVWETLLNDEMVCLMNPEHPLASQAQISIDDYLSFSHISISDSDLNTPFFEMQLAQQSRNRAVPISVADFGSAA
LLCHHSELLFTCSRRWAETAFQAQGLVTKTMPLDYGEVAYSLVWHKQSMNDPALRWLYQQLLEFTRMEFTRMEFQ

Specific function: Transcriptional activator that regulates the expression of genes involved in symbiosis. Among other targets it acts on the nolWBTUV operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=290, Percent_Identity=23.7931034482759, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87081684, Length=318, Percent_Identity=21.3836477987421, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35773; Mature: 35773

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS50931 HTH_LYSR ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLAKLSHISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRLSLDDELFYRHG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCC
NKLVATPLARRLGPSVHQIINDMNQLVTQEAFNPAEYKGRFSLAMRESTFELLAAKFMAH
CEEEECHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEEEHHHHHHHHHHHHHHH
VLTLAPNIRLDIFAKDSVGFEGLVKGNLDFILLPHDRSQPPISQQQLVWETLLNDEMVCL
HHHHCCCCEEEEEECCCCCCCEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEE
MNPEHPLASQAQISIDDYLSFSHISISDSDLNTPFFEMQLAQQSRNRAVPISVADFGSAA
ECCCCCCCCCCEEEHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCEE
LLCHHSELLFTCSRRWAETAFQAQGLVTKTMPLDYGEVAYSLVWHKQSMNDPALRWLYQQ
EEEECHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
LLEFTRMEFTRMEFQ
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLAKLSHISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRLSLDDELFYRHG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCC
NKLVATPLARRLGPSVHQIINDMNQLVTQEAFNPAEYKGRFSLAMRESTFELLAAKFMAH
CEEEECHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEEEHHHHHHHHHHHHHHH
VLTLAPNIRLDIFAKDSVGFEGLVKGNLDFILLPHDRSQPPISQQQLVWETLLNDEMVCL
HHHHCCCCEEEEEECCCCCCCEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEE
MNPEHPLASQAQISIDDYLSFSHISISDSDLNTPFFEMQLAQQSRNRAVPISVADFGSAA
ECCCCCCCCCCEEEHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCEE
LLCHHSELLFTCSRRWAETAFQAQGLVTKTMPLDYGEVAYSLVWHKQSMNDPALRWLYQQ
EEEECHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
LLEFTRMEFTRMEFQ
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]