| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is 157963520
Identifier: 157963520
GI number: 157963520
Start: 4514577
End: 4515137
Strand: Reverse
Name: 157963520
Synonym: Spea_3708
Alternate gene names: NA
Gene position: 4515137-4514577 (Counterclockwise)
Preceding gene: 157963521
Following gene: 157963515
Centisome position: 87.26
GC content: 39.22
Gene sequence:
>561_bases ATGAGTGAGCTATTACTTTGCATTCATTTATCAAGGCTTCCTTATTTTAGTATTGGAACTCAATTACTCATGCGTGAACT TTTTGAACGTTTTCTCTGGAGCAGCCGTTTATCGGTCATGTTTGGTGTCTTGTCATGTATTGTGGCGGCGTTTGTCGTTT TTGCCATGGGGCTGAGAGATGTAGTGCACATGATTGAGCTGATTATGGGTTATATATTTAGCGGTAGCCATGCAGTGCGT AATGATCTAGTGATGGTGGTGGTGGAGATCTTAGATACATTCTTATTAGGCGCAGTTTTGCTTATCTTTGCTTTTGGTTT ATACGAGCTATTTATTAGTAACCTGAAAAGTGCCGGTACAAGTGAAGCAGGCGGTAAAATTCTGATCATTAGCAGTATAG ATTCATTAAAGAGTAAGCTAGGTAAGGTGATCTTAATGATGCTGATCATTAAGGTATTCTCTTTCTTTACCGAAATGAAA CCAACTTCTATGCTTGAGCTACTCTATATGGGCATTACCGTAGTATTGATCGCAGGAGCTTTGAAGCTTAGCAAAGACTA A
Upstream 100 bases:
>100_bases TTAGCTAAGATGATGAAGTGTGACCAGGTTCACGAATTGTTGTGAATTTTCTGTAGTAGGCAAGGGCTTATTCTACACTC CCGCCTATTCTAAGGTTTTG
Downstream 100 bases:
>100_bases CTTCATACTTCGCTTTGTCCCGTCCTGAAATAGGTTGACGGTTTTTACTAGACCAGTAGCTTCTGCTGCTGGTCTTTTTT ATGCACTTGATTAGGTGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Integral Membrane Protein
Number of amino acids: Translated: 186; Mature: 185
Protein sequence:
>186_residues MSELLLCIHLSRLPYFSIGTQLLMRELFERFLWSSRLSVMFGVLSCIVAAFVVFAMGLRDVVHMIELIMGYIFSGSHAVR NDLVMVVVEILDTFLLGAVLLIFAFGLYELFISNLKSAGTSEAGGKILIISSIDSLKSKLGKVILMMLIIKVFSFFTEMK PTSMLELLYMGITVVLIAGALKLSKD
Sequences:
>Translated_186_residues MSELLLCIHLSRLPYFSIGTQLLMRELFERFLWSSRLSVMFGVLSCIVAAFVVFAMGLRDVVHMIELIMGYIFSGSHAVR NDLVMVVVEILDTFLLGAVLLIFAFGLYELFISNLKSAGTSEAGGKILIISSIDSLKSKLGKVILMMLIIKVFSFFTEMK PTSMLELLYMGITVVLIAGALKLSKD >Mature_185_residues SELLLCIHLSRLPYFSIGTQLLMRELFERFLWSSRLSVMFGVLSCIVAAFVVFAMGLRDVVHMIELIMGYIFSGSHAVRN DLVMVVVEILDTFLLGAVLLIFAFGLYELFISNLKSAGTSEAGGKILIISSIDSLKSKLGKVILMMLIIKVFSFFTEMKP TSMLELLYMGITVVLIAGALKLSKD
Specific function: Unknown
COG id: COG2862
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20659; Mature: 20527
Theoretical pI: Translated: 8.22; Mature: 8.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 6.5 %Met (Translated Protein) 7.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 5.9 %Met (Mature Protein) 7.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELLLCIHLSRLPYFSIGTQLLMRELFERFLWSSRLSVMFGVLSCIVAAFVVFAMGLRD CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVHMIELIMGYIFSGSHAVRNDLVMVVVEILDTFLLGAVLLIFAFGLYELFISNLKSAGT HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SEAGGKILIISSIDSLKSKLGKVILMMLIIKVFSFFTEMKPTSMLELLYMGITVVLIAGA CCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LKLSKD HHHCCC >Mature Secondary Structure SELLLCIHLSRLPYFSIGTQLLMRELFERFLWSSRLSVMFGVLSCIVAAFVVFAMGLRD CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVHMIELIMGYIFSGSHAVRNDLVMVVVEILDTFLLGAVLLIFAFGLYELFISNLKSAGT HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SEAGGKILIISSIDSLKSKLGKVILMMLIIKVFSFFTEMKPTSMLELLYMGITVVLIAGA CCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LKLSKD HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA