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The map label for this gene is yhcM [H]

Identifier: 157963410

GI number: 157963410

Start: 4388492

End: 4389595

Strand: Reverse

Name: yhcM [H]

Synonym: Spea_3596

Alternate gene names: 157963410

Gene position: 4389595-4388492 (Counterclockwise)

Preceding gene: 157963414

Following gene: 157963409

Centisome position: 84.83

GC content: 44.84

Gene sequence:

>1104_bases
GTGTCGCAATTAACTCCATGGCAGCATTATCAGCAAGATCTAACTCGAGATGATTTTTCATATGACGCCGCTCAAGAGCT
GGCCGTAAAACAGTTACAGCGGGTCTATGATGATCTGATCGCCTTAAATGATAATCAGAGTAAGGGCTTATTCTCTCTGT
TTAGCAAAAAACGTAAACAAGGGGTTCAAGGCTTATATTTATGGGGCGGGGTAGGTCGCGGTAAGACCTATCTGATGGAC
ACTTTCTTCGATGCCTTGCCTAGTGATAAAAAATTACGAGCACATTTTCATCGTTTTATGCATCAACTACATATCGATCT
TGCTGAGTTACAAGGGCAAAGAGACCCTCTCATTGCTATTGCGAAGAAAATGGCGACGCAATATCAGGTGATCTGTTTTG
ACGAGTTCTTTGTATCAGATATTACCGATGCCATGTTGCTCGGTAGCTTGTTTGAGTCACTTTTTGCCGAAGGCGTAGCT
CTAGTCGCAACTTCTAACATCATTCCTGATGAACTCTATCGTAATGGCCTGCAGCGTGCGCGTTTCTTGCCTGCGATTGC
CGCCATCAATAAACATTGCGATGTGCTCAATGTTGATTCAGGTGTCGACTACCGCTTAAGAACTTTAGAGCAGGCTGAGA
TCTTCCATTCCCCCTTGGACACTAAAGCCGAGCAAAATCTAAAAGAGTACTTTGAGAAACTCGCGCCGGAATCTGAAGTA
TCGACCCAAGGCTTGGAAATCGATGGTCGAATCATAGCTATTCGTCAGCAGGCGCAAGGGGTGTTGCTTATCGACTTTAG
AGCCTTATGTGATGGCCCTAGAAGCCAGCGAGATTATATGGAAGTGGCAAGGTTATACCATACGGTGCTATTGAGTAATG
TCGAACAGATGGGGGAACATTTAACTGGTGATGATATCGCGCGTCGCTTCTTAGCTATGGTGGATGAGTTTTACGAGCGT
AATGTAAAACTGATTATCTCATCGGCGGTTACTCTTGAGGAGATCTATACCGAAGGCTTATTAAGCTTCGAGTTTAGGCG
CTGCCGCTCTAGGTTAACTGAGATGCAATCTCATGATTATCTGGCTTTGGAGCATATCCCGTAG

Upstream 100 bases:

>100_bases
CCATTGACTGAGAATGATTAAAAATACCTCATCAAACGGCTCTGTCTTTAATTTAAGTGGGCTGATTTGTGTATTCCCCT
ATAAATAGAGAAGTATTTAC

Downstream 100 bases:

>100_bases
ATTTTCTGTTTAAAAATAATAGAAAACTGCAGCAGGATCGCTTATTGTTCGCGGCCAAAAATGTTTGCAGCGACATTAAA
GAGCCTTACTAGAAGGATCT

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MSQLTPWQHYQQDLTRDDFSYDAAQELAVKQLQRVYDDLIALNDNQSKGLFSLFSKKRKQGVQGLYLWGGVGRGKTYLMD
TFFDALPSDKKLRAHFHRFMHQLHIDLAELQGQRDPLIAIAKKMATQYQVICFDEFFVSDITDAMLLGSLFESLFAEGVA
LVATSNIIPDELYRNGLQRARFLPAIAAINKHCDVLNVDSGVDYRLRTLEQAEIFHSPLDTKAEQNLKEYFEKLAPESEV
STQGLEIDGRIIAIRQQAQGVLLIDFRALCDGPRSQRDYMEVARLYHTVLLSNVEQMGEHLTGDDIARRFLAMVDEFYER
NVKLIISSAVTLEEIYTEGLLSFEFRRCRSRLTEMQSHDYLALEHIP

Sequences:

>Translated_367_residues
MSQLTPWQHYQQDLTRDDFSYDAAQELAVKQLQRVYDDLIALNDNQSKGLFSLFSKKRKQGVQGLYLWGGVGRGKTYLMD
TFFDALPSDKKLRAHFHRFMHQLHIDLAELQGQRDPLIAIAKKMATQYQVICFDEFFVSDITDAMLLGSLFESLFAEGVA
LVATSNIIPDELYRNGLQRARFLPAIAAINKHCDVLNVDSGVDYRLRTLEQAEIFHSPLDTKAEQNLKEYFEKLAPESEV
STQGLEIDGRIIAIRQQAQGVLLIDFRALCDGPRSQRDYMEVARLYHTVLLSNVEQMGEHLTGDDIARRFLAMVDEFYER
NVKLIISSAVTLEEIYTEGLLSFEFRRCRSRLTEMQSHDYLALEHIP
>Mature_366_residues
SQLTPWQHYQQDLTRDDFSYDAAQELAVKQLQRVYDDLIALNDNQSKGLFSLFSKKRKQGVQGLYLWGGVGRGKTYLMDT
FFDALPSDKKLRAHFHRFMHQLHIDLAELQGQRDPLIAIAKKMATQYQVICFDEFFVSDITDAMLLGSLFESLFAEGVAL
VATSNIIPDELYRNGLQRARFLPAIAAINKHCDVLNVDSGVDYRLRTLEQAEIFHSPLDTKAEQNLKEYFEKLAPESEVS
TQGLEIDGRIIAIRQQAQGVLLIDFRALCDGPRSQRDYMEVARLYHTVLLSNVEQMGEHLTGDDIARRFLAMVDEFYERN
VKLIISSAVTLEEIYTEGLLSFEFRRCRSRLTEMQSHDYLALEHIP

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=403, Percent_Identity=33.2506203473945, Blast_Score=217, Evalue=2e-56,
Organism=Escherichia coli, GI1789627, Length=375, Percent_Identity=50.1333333333333, Blast_Score=358, Evalue=1e-100,
Organism=Caenorhabditis elegans, GI17505769, Length=283, Percent_Identity=38.1625441696113, Blast_Score=206, Evalue=1e-53,
Organism=Saccharomyces cerevisiae, GI6320783, Length=414, Percent_Identity=28.743961352657, Blast_Score=152, Evalue=6e-38,
Organism=Drosophila melanogaster, GI20129913, Length=293, Percent_Identity=36.1774744027304, Blast_Score=182, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42172; Mature: 42040

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EEECCCC
>Mature Secondary Structure 
SQLTPWQHYQQDLTRDDFSYDAAQELAVKQLQRVYDDLIALNDNQSKGLFSLFSKKRKQ
CCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
GVQGLYLWGGVGRGKTYLMDTFFDALPSDKKLRAHFHRFMHQLHIDLAELQGQRDPLIAI
CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
AKKMATQYQVICFDEFFVSDITDAMLLGSLFESLFAEGVALVATSNIIPDELYRNGLQRA
HHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHCCCCCHHHHHHHHHHHH
RFLPAIAAINKHCDVLNVDSGVDYRLRTLEQAEIFHSPLDTKAEQNLKEYFEKLAPESEV
HHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
STQGLEIDGRIIAIRQQAQGVLLIDFRALCDGPRSQRDYMEVARLYHTVLLSNVEQMGEH
CCCCCEECCEEEEEEECCCCEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
LTGDDIARRFLAMVDEFYERNVKLIISSAVTLEEIYTEGLLSFEFRRCRSRLTEMQSHDY
CCHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LALEHIP
EEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]