| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157963331
Identifier: 157963331
GI number: 157963331
Start: 4298066
End: 4299208
Strand: Reverse
Name: 157963331
Synonym: Spea_3517
Alternate gene names: NA
Gene position: 4299208-4298066 (Counterclockwise)
Preceding gene: 157963332
Following gene: 157963330
Centisome position: 83.08
GC content: 43.39
Gene sequence:
>1143_bases GTGGCAATTTCGGTAGCAGGCGGGGTTAAACCTGCACAAATCATAGAGGTAGAGCAACGACTGCAAAAGCAATTAATTGT TGGAAAGGGCAAAGCGGTTGTGATGGCTGATGATATTAGCCCTGAGCTAGAAGATGATGCCAATAAGCTCGAGATTGAAC GTGAGGCAATTCAAGCAAGATTAGCGAAGCAGAATCAGGCTAAGGCCATTTATGACGCTGTCTCTAACCAATTACTCACG AGTGTTAATGCTAATATCGAGCATCAGCTATCTTCTCCAGAGCAAGTACTGCAACTGTCAAAGCTCGATGAAAAACAGAT TTTATTATTGGAACTATTGTATTCACCTCAGGTTGACTTAGTCCGTATAAGGCCATTAGTAACGGCACTGCCATGGTTAG AGCGGGACTTGGTCAATATGGTCAATAGCCCAACATTTAGGCATCGCCGGCCCAAATCATCAGAGGTACAGGTTACTGAT ATCAAGTTGGTGCTCAATTATATTGGTATCGAAAACTTACAATCCTTAGTTCCCTATTATTGCCTAAGGCATTTAATGCC TGCTGGCCAGCCACAAATGTTGTGGTTAACGCGAAAAATATGGCGGTACAGCATGGTCTCTTCGATTGCGGCTCAAGCGC TAGCCGAGCTACATGAAAAAGACAGAGCTTTTATTTACAGCTGCAGCCTGATGAGCCAACTGGGCGTCACTTGCGTCATT AATCAATGTGCAAAAACTTTTGATGATATGTGGGGAGCTTGGTTGAGGGAGGCGAGTGCTAGCCGTGATAAAGAGCTTTA TGATGCCGTAATGGCAACAGAGTTCCCCGCCAATGATGTCTATCAGCTAGTGTTGAGCCATAGTCGCTCGCTTAACTGGC AGTTACTCAGCCTGCTTAAGTTTGACAATAGCCGTCTAACCCAAACCTACAAGGCCATCGATACTAAGATTAAATATGCT GAGCTGGATGAGGATTCTGCTTTAATCGAGCGGGCTAACTGTTATGCAAAAGTCTATTTGTTAAAAGAGGCTAAAAATAT TACTGCTGCAGAGTGCCGTTTAATGTTTGATTATTATCAAATATCAGAGCAGGAACAGATCCGTTTGAGCGGGCAAAATT ATAGTAAGCTTGTACTCTTTTAA
Upstream 100 bases:
>100_bases GTTCAGAAGGTGGATTCTGTATTTTATCCCCGTCAGTTTTAGCCAAACTTATGATTAATCGGTAGACTGGTAATAATCGT TAAAGGGAGCGTGTTAATCA
Downstream 100 bases:
>100_bases GTTTAGTCTTTTAAGTTTACTCATTTTGTTAACCAACACGACTTGATATTGAGCGATTAAACTATGGTTTAGTCGTGTTG AGTGTTCGTTCACCAGTATT
Product: metal-dependent hydrolase HDOD
Products: NA
Alternate protein names: HD Superfamily Hydrolase; Metal-Dependent Hydrolase HDOD
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MAISVAGGVKPAQIIEVEQRLQKQLIVGKGKAVVMADDISPELEDDANKLEIEREAIQARLAKQNQAKAIYDAVSNQLLT SVNANIEHQLSSPEQVLQLSKLDEKQILLLELLYSPQVDLVRIRPLVTALPWLERDLVNMVNSPTFRHRRPKSSEVQVTD IKLVLNYIGIENLQSLVPYYCLRHLMPAGQPQMLWLTRKIWRYSMVSSIAAQALAELHEKDRAFIYSCSLMSQLGVTCVI NQCAKTFDDMWGAWLREASASRDKELYDAVMATEFPANDVYQLVLSHSRSLNWQLLSLLKFDNSRLTQTYKAIDTKIKYA ELDEDSALIERANCYAKVYLLKEAKNITAAECRLMFDYYQISEQEQIRLSGQNYSKLVLF
Sequences:
>Translated_380_residues MAISVAGGVKPAQIIEVEQRLQKQLIVGKGKAVVMADDISPELEDDANKLEIEREAIQARLAKQNQAKAIYDAVSNQLLT SVNANIEHQLSSPEQVLQLSKLDEKQILLLELLYSPQVDLVRIRPLVTALPWLERDLVNMVNSPTFRHRRPKSSEVQVTD IKLVLNYIGIENLQSLVPYYCLRHLMPAGQPQMLWLTRKIWRYSMVSSIAAQALAELHEKDRAFIYSCSLMSQLGVTCVI NQCAKTFDDMWGAWLREASASRDKELYDAVMATEFPANDVYQLVLSHSRSLNWQLLSLLKFDNSRLTQTYKAIDTKIKYA ELDEDSALIERANCYAKVYLLKEAKNITAAECRLMFDYYQISEQEQIRLSGQNYSKLVLF >Mature_379_residues AISVAGGVKPAQIIEVEQRLQKQLIVGKGKAVVMADDISPELEDDANKLEIEREAIQARLAKQNQAKAIYDAVSNQLLTS VNANIEHQLSSPEQVLQLSKLDEKQILLLELLYSPQVDLVRIRPLVTALPWLERDLVNMVNSPTFRHRRPKSSEVQVTDI KLVLNYIGIENLQSLVPYYCLRHLMPAGQPQMLWLTRKIWRYSMVSSIAAQALAELHEKDRAFIYSCSLMSQLGVTCVIN QCAKTFDDMWGAWLREASASRDKELYDAVMATEFPANDVYQLVLSHSRSLNWQLLSLLKFDNSRLTQTYKAIDTKIKYAE LDEDSALIERANCYAKVYLLKEAKNITAAECRLMFDYYQISEQEQIRLSGQNYSKLVLF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43379; Mature: 43247
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAISVAGGVKPAQIIEVEQRLQKQLIVGKGKAVVMADDISPELEDDANKLEIEREAIQAR CEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH LAKQNQAKAIYDAVSNQLLTSVNANIEHQLSSPEQVLQLSKLDEKQILLLELLYSPQVDL HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCE VRIRPLVTALPWLERDLVNMVNSPTFRHRRPKSSEVQVTDIKLVLNYIGIENLQSLVPYY EHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHCHHHHHHHHHHH CLRHLMPAGQPQMLWLTRKIWRYSMVSSIAAQALAELHEKDRAFIYSCSLMSQLGVTCVI HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHH NQCAKTFDDMWGAWLREASASRDKELYDAVMATEFPANDVYQLVLSHSRSLNWQLLSLLK HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHH FDNSRLTQTYKAIDTKIKYAELDEDSALIERANCYAKVYLLKEAKNITAAECRLMFDYYQ CCCHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHEEEEEEHHCCCCCHHHHHHHHHHHH ISEQEQIRLSGQNYSKLVLF CCCCHHEEECCCCCCEEEEC >Mature Secondary Structure AISVAGGVKPAQIIEVEQRLQKQLIVGKGKAVVMADDISPELEDDANKLEIEREAIQAR EEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH LAKQNQAKAIYDAVSNQLLTSVNANIEHQLSSPEQVLQLSKLDEKQILLLELLYSPQVDL HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCE VRIRPLVTALPWLERDLVNMVNSPTFRHRRPKSSEVQVTDIKLVLNYIGIENLQSLVPYY EHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHCHHHHHHHHHHH CLRHLMPAGQPQMLWLTRKIWRYSMVSSIAAQALAELHEKDRAFIYSCSLMSQLGVTCVI HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHH NQCAKTFDDMWGAWLREASASRDKELYDAVMATEFPANDVYQLVLSHSRSLNWQLLSLLK HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHH FDNSRLTQTYKAIDTKIKYAELDEDSALIERANCYAKVYLLKEAKNITAAECRLMFDYYQ CCCHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHEEEEEEHHCCCCCHHHHHHHHHHHH ISEQEQIRLSGQNYSKLVLF CCCCHHEEECCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA