| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157963209
Identifier: 157963209
GI number: 157963209
Start: 4149053
End: 4150357
Strand: Reverse
Name: 157963209
Synonym: Spea_3394
Alternate gene names: NA
Gene position: 4150357-4149053 (Counterclockwise)
Preceding gene: 157963210
Following gene: 157963203
Centisome position: 80.21
GC content: 44.52
Gene sequence:
>1305_bases ATGACTGTAAAAAAATGGACTCTAACGGCAATCTCTGCGCTGGCTATAACGGCTTGTGGTGGAGGCGGAGATGACTCCGG CTCTAGCGATAATGGAGGTTCGTCTAGCGGAAATGTACCGAAAATCACTTTAAATACTGTTGTAAGTAATTGGTGTGGAA TTGAAAAACCTAAATCTGGAGTCGATGTATTTGTGCACAACAATGCCGGTGATATTATTGCTGAGTACGTTACTGATGGT GATGGCGCGCTCACAGCTGATTGGCCGAGTAACGCTAAACACCTCACACTAACTGCAAATAATCAGTCTTATTACAAAGA CCTGCCTACTCTTACTGTTATCTCTAATGTTGCCGTTGAAGCAGGCGATCAAGGTATTACACATTTTTGGGATGATAACG ATCAAGCAGGTTGTGATTGTAAGTATGTTGAGTTTCCTGTGCAGTCACTTATTACTGATGCGCCTGATAGCATGCTTTAT CTAGGAGGCACCAGTCATGAGTTAACGCCATTTACGAGCTCGCTCTCAGTGGAGTGGTGTGATGGTGCTGGCCCAATAGA TGTGCAGTTAGTGGCTGCTGATGGTCAGAGCAGCCTAGCTGGCAGTATTGATTTGGCCGATAAAACAGAATATACATTGA GCATGAGTGACTTCACTCATGAAGGTGTTGCAGTTGATTATGTTAATCCATATGACGCACGGATCTTATATGCCCGTTCA TTTGAAGGCTGGACCAATTTTAGCCAAGACGATTTAGTTTTTGTCTATCCAACATTAACCGATAGTAGTTATGTTTGGCC TGCAAGAATGGGTCAAGAATACGTAGGTAATGTGGCAGCTGATAGTTATAGCTCTGCACGACACCGAGTCAACTCCGAGG GAAAGACCTCTCCGATTATGCTGTGGGATCCAGCTAACGGTTATTCTGATGCGGTTTACGCATTATTCAGCGAAATATCC ACAGGTAAAGCGCCCTACGATTATGATTTCAGGGGGGTGAGCAATGTAGCGTTGACTCACATGACTTTATCGGGGGATCT TGATAATGGTGACGCCGAATGGACTATTTGGGGCGGCGCATCAGGCAGTATGCCAGATCTCAAATTGCCAGCCGCTTTGG ATGCAAGGTTTGATTCTCTTTATTACGCTAGATTACAGATAGGTGTTAGAGGTTATGGCTCTGAAAAGCCATTAAGCGAA TGGCGTAAATTGCTAGTAGAAAGAAACCGTATGGATGAGAGAGGCACAAGCGCGCTCGATTATGAAACTAATTATATGCG TCTGAGTTTCGACCTAGAGCAGTAG
Upstream 100 bases:
>100_bases TCACGACTATATAGGCAAAACCGTTGTTGTCAGAATGCAGTGATAAAGAATAGGTTCAAAATTTAACTTCAATAAATCCA AACATATTCAGGAAGAAGAT
Downstream 100 bases:
>100_bases TCTTATGTAAGACCTCGTGCCAAATAGGTTTTAATTATGGCCGTAAAAACAAAAAGACAGCGCAAGCTGTCTTTTTTATG TTTAGTGGTTTAAGCGCTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 434; Mature: 433
Protein sequence:
>434_residues MTVKKWTLTAISALAITACGGGGDDSGSSDNGGSSSGNVPKITLNTVVSNWCGIEKPKSGVDVFVHNNAGDIIAEYVTDG DGALTADWPSNAKHLTLTANNQSYYKDLPTLTVISNVAVEAGDQGITHFWDDNDQAGCDCKYVEFPVQSLITDAPDSMLY LGGTSHELTPFTSSLSVEWCDGAGPIDVQLVAADGQSSLAGSIDLADKTEYTLSMSDFTHEGVAVDYVNPYDARILYARS FEGWTNFSQDDLVFVYPTLTDSSYVWPARMGQEYVGNVAADSYSSARHRVNSEGKTSPIMLWDPANGYSDAVYALFSEIS TGKAPYDYDFRGVSNVALTHMTLSGDLDNGDAEWTIWGGASGSMPDLKLPAALDARFDSLYYARLQIGVRGYGSEKPLSE WRKLLVERNRMDERGTSALDYETNYMRLSFDLEQ
Sequences:
>Translated_434_residues MTVKKWTLTAISALAITACGGGGDDSGSSDNGGSSSGNVPKITLNTVVSNWCGIEKPKSGVDVFVHNNAGDIIAEYVTDG DGALTADWPSNAKHLTLTANNQSYYKDLPTLTVISNVAVEAGDQGITHFWDDNDQAGCDCKYVEFPVQSLITDAPDSMLY LGGTSHELTPFTSSLSVEWCDGAGPIDVQLVAADGQSSLAGSIDLADKTEYTLSMSDFTHEGVAVDYVNPYDARILYARS FEGWTNFSQDDLVFVYPTLTDSSYVWPARMGQEYVGNVAADSYSSARHRVNSEGKTSPIMLWDPANGYSDAVYALFSEIS TGKAPYDYDFRGVSNVALTHMTLSGDLDNGDAEWTIWGGASGSMPDLKLPAALDARFDSLYYARLQIGVRGYGSEKPLSE WRKLLVERNRMDERGTSALDYETNYMRLSFDLEQ >Mature_433_residues TVKKWTLTAISALAITACGGGGDDSGSSDNGGSSSGNVPKITLNTVVSNWCGIEKPKSGVDVFVHNNAGDIIAEYVTDGD GALTADWPSNAKHLTLTANNQSYYKDLPTLTVISNVAVEAGDQGITHFWDDNDQAGCDCKYVEFPVQSLITDAPDSMLYL GGTSHELTPFTSSLSVEWCDGAGPIDVQLVAADGQSSLAGSIDLADKTEYTLSMSDFTHEGVAVDYVNPYDARILYARSF EGWTNFSQDDLVFVYPTLTDSSYVWPARMGQEYVGNVAADSYSSARHRVNSEGKTSPIMLWDPANGYSDAVYALFSEIST GKAPYDYDFRGVSNVALTHMTLSGDLDNGDAEWTIWGGASGSMPDLKLPAALDARFDSLYYARLQIGVRGYGSEKPLSEW RKLLVERNRMDERGTSALDYETNYMRLSFDLEQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47095; Mature: 46964
Theoretical pI: Translated: 4.12; Mature: 4.12
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVKKWTLTAISALAITACGGGGDDSGSSDNGGSSSGNVPKITLNTVVSNWCGIEKPKSG CCCEEEHHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCC VDVFVHNNAGDIIAEYVTDGDGALTADWPSNAKHLTLTANNQSYYKDLPTLTVISNVAVE CEEEEECCCCCEEEEEEECCCCEEEECCCCCCCEEEEEECCCHHHHCCCCEEEHHHHHEE AGDQGITHFWDDNDQAGCDCKYVEFPVQSLITDAPDSMLYLGGTSHELTPFTSSLSVEWC CCCCCCEEEECCCCCCCCCEEEEECCHHHHHCCCCCCEEEECCCCCCCCCCCCCCEEEEE DGAGPIDVQLVAADGQSSLAGSIDLADKTEYTLSMSDFTHEGVAVDYVNPYDARILYARS CCCCCEEEEEEEECCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCEEEEEEC FEGWTNFSQDDLVFVYPTLTDSSYVWPARMGQEYVGNVAADSYSSARHRVNSEGKTSPIM CCCCCCCCCCCEEEEEEECCCCCEECHHHHCHHHHCCHHCCCHHHHHHHCCCCCCCCCEE LWDPANGYSDAVYALFSEISTGKAPYDYDFRGVSNVALTHMTLSGDLDNGDAEWTIWGGA EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEECC SGSMPDLKLPAALDARFDSLYYARLQIGVRGYGSEKPLSEWRKLLVERNRMDERGTSALD CCCCCCCCCCHHHHHHHHHEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEE YETNYMRLSFDLEQ ECCCEEEEEEEECC >Mature Secondary Structure TVKKWTLTAISALAITACGGGGDDSGSSDNGGSSSGNVPKITLNTVVSNWCGIEKPKSG CCEEEHHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCC VDVFVHNNAGDIIAEYVTDGDGALTADWPSNAKHLTLTANNQSYYKDLPTLTVISNVAVE CEEEEECCCCCEEEEEEECCCCEEEECCCCCCCEEEEEECCCHHHHCCCCEEEHHHHHEE AGDQGITHFWDDNDQAGCDCKYVEFPVQSLITDAPDSMLYLGGTSHELTPFTSSLSVEWC CCCCCCEEEECCCCCCCCCEEEEECCHHHHHCCCCCCEEEECCCCCCCCCCCCCCEEEEE DGAGPIDVQLVAADGQSSLAGSIDLADKTEYTLSMSDFTHEGVAVDYVNPYDARILYARS CCCCCEEEEEEEECCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCEEEEEEC FEGWTNFSQDDLVFVYPTLTDSSYVWPARMGQEYVGNVAADSYSSARHRVNSEGKTSPIM CCCCCCCCCCCEEEEEEECCCCCEECHHHHCHHHHCCHHCCCHHHHHHHCCCCCCCCCEE LWDPANGYSDAVYALFSEISTGKAPYDYDFRGVSNVALTHMTLSGDLDNGDAEWTIWGGA EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEECC SGSMPDLKLPAALDARFDSLYYARLQIGVRGYGSEKPLSEWRKLLVERNRMDERGTSALD CCCCCCCCCCHHHHHHHHHEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEE YETNYMRLSFDLEQ ECCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA