| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is 157963021
Identifier: 157963021
GI number: 157963021
Start: 3928312
End: 3929040
Strand: Reverse
Name: 157963021
Synonym: Spea_3204
Alternate gene names: NA
Gene position: 3929040-3928312 (Counterclockwise)
Preceding gene: 157963022
Following gene: 157963019
Centisome position: 75.93
GC content: 42.25
Gene sequence:
>729_bases ATGACAGATCTTGAGCAGCAAGTATTTACTCAAGTACGTGCCATTATCAGCAATGAAGAGCAGGTAATAGGTCGTCGAGG GATTTTAATCCCATTGAAAAAGGCTATTATTGCAGACGGTGATATTCGCAATGTCATTGATATCGTTTCGTCTGATCCTG CGTTATCTGCTCACCTGCTATGGCGCAGTAGCAGCGCAGATCACGCCACAGCTCAGTCGAGTAAGAATCGTTCCTTAAAA GACGCCTTAGTGCGCTTGGGCCAAGTTAACATTTATCGCTATGCTTTTACTTTCTATCTGAAAGAGCGTTTAGACGAGCT CAATGAACCGTACAAGAAACTCATTCACGGTTACTGGGCAATGACTGAAGCGATTGCAGTAGATGCTGTTGATCAGTTAT ATCAAATGGATAGTGTGCAAATTAATCCTGATGAAGTACAAACATTGGCACTGTTTAGTGTGTTTGGTGACATTATCGCA CTGACCGCATTTGCCTACTTAAATTCGGAACGCACAGAGCCTTACCCGTTAAGCTTACTTAAGTCCGTGATTGAGGAGCA GCAGCAAGCACTGACCCTAGAAGCTTTTGAGTCATTAGGACTAGATGATGATCTTAGCGGCGAGTTTATGATTGCTCATA ATTTACGAAAGACACACAATGTTAATTCTCCAGGCCTAGTATTAAGGCGGGTATTAACAAAGAGAAACTTATTGCTTAAC CCAATATAG
Upstream 100 bases:
>100_bases TGAAATAAATGCACATATAATCGAGCTACTTATAGATGGCCACCCAGCTGTATAAACTAGTTAGCGATAATTATTAGAAG AATAAGGTTTAACGTTTCAC
Downstream 100 bases:
>100_bases CAAACCAAAAAAGCCTGCAGTATGCAGGCTTTTTGTTAACTAACTCAGACTTAATTGAGCTTCTGTTTTGCCAAACCTTC TTTAGCCACTAGCTCTAACC
Product: putative signal transduction protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MTDLEQQVFTQVRAIISNEEQVIGRRGILIPLKKAIIADGDIRNVIDIVSSDPALSAHLLWRSSSADHATAQSSKNRSLK DALVRLGQVNIYRYAFTFYLKERLDELNEPYKKLIHGYWAMTEAIAVDAVDQLYQMDSVQINPDEVQTLALFSVFGDIIA LTAFAYLNSERTEPYPLSLLKSVIEEQQQALTLEAFESLGLDDDLSGEFMIAHNLRKTHNVNSPGLVLRRVLTKRNLLLN PI
Sequences:
>Translated_242_residues MTDLEQQVFTQVRAIISNEEQVIGRRGILIPLKKAIIADGDIRNVIDIVSSDPALSAHLLWRSSSADHATAQSSKNRSLK DALVRLGQVNIYRYAFTFYLKERLDELNEPYKKLIHGYWAMTEAIAVDAVDQLYQMDSVQINPDEVQTLALFSVFGDIIA LTAFAYLNSERTEPYPLSLLKSVIEEQQQALTLEAFESLGLDDDLSGEFMIAHNLRKTHNVNSPGLVLRRVLTKRNLLLN PI >Mature_241_residues TDLEQQVFTQVRAIISNEEQVIGRRGILIPLKKAIIADGDIRNVIDIVSSDPALSAHLLWRSSSADHATAQSSKNRSLKD ALVRLGQVNIYRYAFTFYLKERLDELNEPYKKLIHGYWAMTEAIAVDAVDQLYQMDSVQINPDEVQTLALFSVFGDIIAL TAFAYLNSERTEPYPLSLLKSVIEEQQQALTLEAFESLGLDDDLSGEFMIAHNLRKTHNVNSPGLVLRRVLTKRNLLLNP I
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27299; Mature: 27167
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLEQQVFTQVRAIISNEEQVIGRRGILIPLKKAIIADGDIRNVIDIVSSDPALSAHLL CCCHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHEE WRSSSADHATAQSSKNRSLKDALVRLGQVNIYRYAFTFYLKERLDELNEPYKKLIHGYWA EECCCCCHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MTEAIAVDAVDQLYQMDSVQINPDEVQTLALFSVFGDIIALTAFAYLNSERTEPYPLSLL HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH KSVIEEQQQALTLEAFESLGLDDDLSGEFMIAHNLRKTHNVNSPGLVLRRVLTKRNLLLN HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHCCCCCC PI CC >Mature Secondary Structure TDLEQQVFTQVRAIISNEEQVIGRRGILIPLKKAIIADGDIRNVIDIVSSDPALSAHLL CCHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHEE WRSSSADHATAQSSKNRSLKDALVRLGQVNIYRYAFTFYLKERLDELNEPYKKLIHGYWA EECCCCCHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MTEAIAVDAVDQLYQMDSVQINPDEVQTLALFSVFGDIIALTAFAYLNSERTEPYPLSLL HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH KSVIEEQQQALTLEAFESLGLDDDLSGEFMIAHNLRKTHNVNSPGLVLRRVLTKRNLLLN HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHCCCCCC PI CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA