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The map label for this gene is yjjV [H]

Identifier: 157962869

GI number: 157962869

Start: 3742733

End: 3743506

Strand: Reverse

Name: yjjV [H]

Synonym: Spea_3051

Alternate gene names: 157962869

Gene position: 3743506-3742733 (Counterclockwise)

Preceding gene: 157962870

Following gene: 157962868

Centisome position: 72.34

GC content: 41.09

Gene sequence:

>774_bases
ATGAAGCCAATTATCGATAGCCATGCTCATATTGATTTTCCTGAGTTTGATAATGACAGGGATGCTTTGTTTCTGCAGAT
GCGTAGTGTCGGCATCGAAAATGTGTTGATCCCTGGTGTTTCAGCCGATAAATGGCAGAGGCAAATACAGGTTGCTAAGC
AATATGACTGTTACTATGCACTAGGCGTTCACCCTTGGTATAGCGAAAGCGCATCAACAGAGAACATGAGTGATTTAAGG
GGCATACTTAAGCTGCGTAAGGGGGATTGCCGGCTAGTGGCTGTCGGAGAGTGTGGTCTAGATAAGTTACATAAAAGTAA
TTTCACAACACAATTGAACCTTTTCAAGGAGCACATTCATATAGCGATGGAGTTTGATCTGCCTCTAATTATGCATGTTG
TCAAAGCCCATGAAGAGGTCATTAAGTGTCTGAGAACCGAGAGTCCACACAGAAAAGGTGTCATCCATGGTTTTTATGGT
GGGCCGCAATTGGCACAACAGTATGTCAATTTGGGTTACAAGCTAGGCATAGGTGGCTTGTTACTTAATGATAATGCACC
GAAGTTACAACAAACAGTGGCGCAATTGCCATTAGAGTCATTCATTTTAGAAACAGATTCACCTGCTATGACTCCCAAAT
CCAGTCAAAATAATCGTAACACTCCATTAATTCTGCCTGAAATCATCAAAAAAATGGCAAATTTACAAAAAAAATCAGCC
GTTCGTATTTCAGAACAGACGTTCTTTAATGTCTCGCAACTCTTTGACCTTTAA

Upstream 100 bases:

>100_bases
TCTGAATCGAGAGATAGAGAATCTGTAATTGAAGTACTAACGGAAAAGACTGACTGCAAATCACATAATAGCTAGCCTCA
AACAGAGTGAAAGGGACGTT

Downstream 100 bases:

>100_bases
TTTTTTTCTGTACAAACAGATGTATCTCGCACCAGAAATGCCAACGAAATCATTGAAATAAAACCTCAAAAATTTGATCA
ATACGACGCTTTTAGCAACC

Product: TatD-like deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MKPIIDSHAHIDFPEFDNDRDALFLQMRSVGIENVLIPGVSADKWQRQIQVAKQYDCYYALGVHPWYSESASTENMSDLR
GILKLRKGDCRLVAVGECGLDKLHKSNFTTQLNLFKEHIHIAMEFDLPLIMHVVKAHEEVIKCLRTESPHRKGVIHGFYG
GPQLAQQYVNLGYKLGIGGLLLNDNAPKLQQTVAQLPLESFILETDSPAMTPKSSQNNRNTPLILPEIIKKMANLQKKSA
VRISEQTFFNVSQLFDL

Sequences:

>Translated_257_residues
MKPIIDSHAHIDFPEFDNDRDALFLQMRSVGIENVLIPGVSADKWQRQIQVAKQYDCYYALGVHPWYSESASTENMSDLR
GILKLRKGDCRLVAVGECGLDKLHKSNFTTQLNLFKEHIHIAMEFDLPLIMHVVKAHEEVIKCLRTESPHRKGVIHGFYG
GPQLAQQYVNLGYKLGIGGLLLNDNAPKLQQTVAQLPLESFILETDSPAMTPKSSQNNRNTPLILPEIIKKMANLQKKSA
VRISEQTFFNVSQLFDL
>Mature_257_residues
MKPIIDSHAHIDFPEFDNDRDALFLQMRSVGIENVLIPGVSADKWQRQIQVAKQYDCYYALGVHPWYSESASTENMSDLR
GILKLRKGDCRLVAVGECGLDKLHKSNFTTQLNLFKEHIHIAMEFDLPLIMHVVKAHEEVIKCLRTESPHRKGVIHGFYG
GPQLAQQYVNLGYKLGIGGLLLNDNAPKLQQTVAQLPLESFILETDSPAMTPKSSQNNRNTPLILPEIIKKMANLQKKSA
VRISEQTFFNVSQLFDL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349734, Length=263, Percent_Identity=28.1368821292776, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI110349730, Length=263, Percent_Identity=27.7566539923954, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI226061853, Length=269, Percent_Identity=28.6245353159851, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI226061595, Length=231, Percent_Identity=29.8701298701299, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI226061614, Length=254, Percent_Identity=25.5905511811024, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI14042943, Length=256, Percent_Identity=21.875, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI225903439, Length=227, Percent_Identity=22.9074889867841, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=33.59375, Blast_Score=157, Evalue=6e-40,
Organism=Escherichia coli, GI48994985, Length=265, Percent_Identity=29.4339622641509, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787342, Length=260, Percent_Identity=25, Blast_Score=91, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17559024, Length=286, Percent_Identity=25.8741258741259, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71980746, Length=245, Percent_Identity=27.3469387755102, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648690, Length=288, Percent_Identity=25, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI221330018, Length=217, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24586117, Length=217, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29082; Mature: 29082

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPIIDSHAHIDFPEFDNDRDALFLQMRSVGIENVLIPGVSADKWQRQIQVAKQYDCYYA
CCCCCCCCCCCCCCCCCCCCHHEEHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCEEE
LGVHPWYSESASTENMSDLRGILKLRKGDCRLVAVGECGLDKLHKSNFTTQLNLFKEHIH
ECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCHHHHHHHHHHEE
IAMEFDLPLIMHVVKAHEEVIKCLRTESPHRKGVIHGFYGGPQLAQQYVNLGYKLGIGGL
EEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHCCEEECCCEE
LLNDNAPKLQQTVAQLPLESFILETDSPAMTPKSSQNNRNTPLILPEIIKKMANLQKKSA
EECCCCHHHHHHHHHCCHHHHEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHH
VRISEQTFFNVSQLFDL
HEEHHHHHHHHHHHHCC
>Mature Secondary Structure
MKPIIDSHAHIDFPEFDNDRDALFLQMRSVGIENVLIPGVSADKWQRQIQVAKQYDCYYA
CCCCCCCCCCCCCCCCCCCCHHEEHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCEEE
LGVHPWYSESASTENMSDLRGILKLRKGDCRLVAVGECGLDKLHKSNFTTQLNLFKEHIH
ECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCHHHHHHHHHHEE
IAMEFDLPLIMHVVKAHEEVIKCLRTESPHRKGVIHGFYGGPQLAQQYVNLGYKLGIGGL
EEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHCCEEECCCEE
LLNDNAPKLQQTVAQLPLESFILETDSPAMTPKSSQNNRNTPLILPEIIKKMANLQKKSA
EECCCCHHHHHHHHHCCHHHHEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHH
VRISEQTFFNVSQLFDL
HEEHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]