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The map label for this gene is deoC [H]

Identifier: 157962866

GI number: 157962866

Start: 3738752

End: 3739525

Strand: Reverse

Name: deoC [H]

Synonym: Spea_3048

Alternate gene names: 157962866

Gene position: 3739525-3738752 (Counterclockwise)

Preceding gene: 157962867

Following gene: 157962865

Centisome position: 72.27

GC content: 46.9

Gene sequence:

>774_bases
ATGAGCGACTTAAAAAAAGCAGCACAACAAGCCATTAGTCTAATGGATCTTACTACCCTAAATGACGATGACACAGATCA
AAAAGTGATCGACCTTTGTCATAAGGCTAAGACGCCAGCTGGTGACACTGCTGCTATCTGTATTTACCCTCGCTTTATTC
CAATTGCACGTAAAACCTTAAATGAAATTGATGGCGACGATATCAAGATCGCAACAGTGACTAACTTCCCACACGGTAAC
GACGACATTGCTATCGCAGTATTAGAGACTCGCGCAGCAGTAGCATACGGTGCAGACGAGGTTGACGTAGTATTCCCATA
CCGCGCCCTAATGGCTGGTAACGAAACTGTCGGTTTCGAGCTAGTTAAAGCCTGTAAAGAAGCTTGTGGTGAAGATGCAA
TCCTTAAAGTTATCATCGAATCTGGCGTATTAGCCGATCCTGCTCTTATCCGTAAGGCATCTGAGCTATCTATCGATGCA
GGCGCAGACTTTATCAAGACCTCTACGGGTAAAGTTGCTGTTAACGCAACGCTAGAAGCGGCAGAGATCATGATGACTGT
GATCAGTGAAAAGAACCCTAAAGTTGGCTTTAAGCCTGCGGGCGGCGTAAAAGACGCCGAAGCTGCTGCCGAGTTTTTAG
GTGTAGCGGCTCGTCTTCTAGGTGATGACTGGGCAACACCAGCGACATTCCGTTTCGGCGCTTCAAGCCTATTAACCAAC
CTACTTCATACACTTGAGCTAGGCGATGCACCACAGGGTGCACAAGGTTACTAA

Upstream 100 bases:

>100_bases
CCGGCCCATAATAATAATCAAAATAAGCCAGTTCAAGGTATCGCCGTGCGATAATTTTCTGTTTTAAATTAATAACTTGA
ATCTTTCTCGGAGAGCTACT

Downstream 100 bases:

>100_bases
CCTTAAAGATTAAACTTGTTGTTAAGTGTGATCTAAATCTAATTAGGTGTATCAAAAGTTCGTTAGTATGTAACAATATT
ACGACTTTTGATTCGCTTTA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSDLKKAAQQAISLMDLTTLNDDDTDQKVIDLCHKAKTPAGDTAAICIYPRFIPIARKTLNEIDGDDIKIATVTNFPHGN
DDIAIAVLETRAAVAYGADEVDVVFPYRALMAGNETVGFELVKACKEACGEDAILKVIIESGVLADPALIRKASELSIDA
GADFIKTSTGKVAVNATLEAAEIMMTVISEKNPKVGFKPAGGVKDAEAAAEFLGVAARLLGDDWATPATFRFGASSLLTN
LLHTLELGDAPQGAQGY

Sequences:

>Translated_257_residues
MSDLKKAAQQAISLMDLTTLNDDDTDQKVIDLCHKAKTPAGDTAAICIYPRFIPIARKTLNEIDGDDIKIATVTNFPHGN
DDIAIAVLETRAAVAYGADEVDVVFPYRALMAGNETVGFELVKACKEACGEDAILKVIIESGVLADPALIRKASELSIDA
GADFIKTSTGKVAVNATLEAAEIMMTVISEKNPKVGFKPAGGVKDAEAAAEFLGVAARLLGDDWATPATFRFGASSLLTN
LLHTLELGDAPQGAQGY
>Mature_256_residues
SDLKKAAQQAISLMDLTTLNDDDTDQKVIDLCHKAKTPAGDTAAICIYPRFIPIARKTLNEIDGDDIKIATVTNFPHGND
DIAIAVLETRAAVAYGADEVDVVFPYRALMAGNETVGFELVKACKEACGEDAILKVIIESGVLADPALIRKASELSIDAG
ADFIKTSTGKVAVNATLEAAEIMMTVISEKNPKVGFKPAGGVKDAEAAAEFLGVAARLLGDDWATPATFRFGASSLLTNL
LHTLELGDAPQGAQGY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=251, Percent_Identity=37.8486055776892, Blast_Score=155, Evalue=2e-38,
Organism=Escherichia coli, GI1790841, Length=236, Percent_Identity=68.6440677966102, Blast_Score=314, Evalue=3e-87,
Organism=Caenorhabditis elegans, GI17533015, Length=250, Percent_Identity=39.6, Blast_Score=159, Evalue=2e-39,
Organism=Drosophila melanogaster, GI19922098, Length=263, Percent_Identity=36.1216730038023, Blast_Score=137, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 27082; Mature: 26951

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLKKAAQQAISLMDLTTLNDDDTDQKVIDLCHKAKTPAGDTAAICIYPRFIPIARKTL
CCHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHH
NEIDGDDIKIATVTNFPHGNDDIAIAVLETRAAVAYGADEVDVVFPYRALMAGNETVGFE
HHCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCEEEEECHHHHHCCCCCHHHH
LVKACKEACGEDAILKVIIESGVLADPALIRKASELSIDAGADFIKTSTGKVAVNATLEA
HHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHCCCCCCEEEEEHHHH
AEIMMTVISEKNPKVGFKPAGGVKDAEAAAEFLGVAARLLGDDWATPATFRFGASSLLTN
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHH
LLHTLELGDAPQGAQGY
HHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SDLKKAAQQAISLMDLTTLNDDDTDQKVIDLCHKAKTPAGDTAAICIYPRFIPIARKTL
CHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHH
NEIDGDDIKIATVTNFPHGNDDIAIAVLETRAAVAYGADEVDVVFPYRALMAGNETVGFE
HHCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCEEEEECHHHHHCCCCCHHHH
LVKACKEACGEDAILKVIIESGVLADPALIRKASELSIDAGADFIKTSTGKVAVNATLEA
HHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHCCCCCCEEEEEHHHH
AEIMMTVISEKNPKVGFKPAGGVKDAEAAAEFLGVAARLLGDDWATPATFRFGASSLLTN
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHH
LLHTLELGDAPQGAQGY
HHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA