| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is fct [H]
Identifier: 157962748
GI number: 157962748
Start: 3586618
End: 3589050
Strand: Reverse
Name: fct [H]
Synonym: Spea_2930
Alternate gene names: 157962748
Gene position: 3589050-3586618 (Counterclockwise)
Preceding gene: 157962749
Following gene: 157962746
Centisome position: 69.36
GC content: 46.49
Gene sequence:
>2433_bases ATGAAACATTTCCGTTATTCGATGTTAGCAATTGCTTGTGCATCGACTTTTTTACCAACCAGTGTATACGCTGAAGTAAC AGATACAGCACTCGATAATGTTGAGCGCATTACTGTCTATGGCCGCCAGAATCAGGTTGTCATGAATTCAGGTTTAGCGA CTAAGTCCGATATGTCCTTAATGGAGACGCCTGCTGCGGTTGTGGTTGTGGATCAAGAGCTCATACAGGCTCAAGCTTTG ACCAATCTACAAGATTTAGTGCGTAACATCAGTGGTGTGACTCAAGCGGGTAATAACTACGGCATTGGCGATAACCTAGT TATCCGCGGTTTAGGGGCAAACTACACCTATGATGGTATGTATGGCGGAGCGGGGCTTGGCAACACCTTTAACCCTACAC GTTCGTTAACCAATGTCGAATCGGTCGAGGTGCTAAAAGGCCCGGCGACGGGGCTTTACGGTATGGGCAGTGCGGGTGGC GTGATTAACCTCATTGAGAAGAAGCCGCAATTTGAGTCTAAGCATGCGTTCACAGCAGAAGTCGGTCAATGGAATACTTA TTCTTTAGAAGCCGACAGCACCGCGGCGATCACCGATGATTTAGCCTATCGCGTCGTCGCTAAAACGGCGCGTAGCGATG GTTACCGAGACATAGGCACCGACCGTGATGAGATCTACACCTCGCTTAAGTATGTGCTCGATGATAGCCAAGACCTGATG TTGTCGGCGAGCTATATCAAAGACGCCATTGCTGTGGACTCAATTGGTCATCCTATTCGCATTTTTAACTCAGCATCTGT TGGCGGTAAAACTGCAGGTGAAGTTAGCTGGGAAGATTTGATTAACGATCCGAACAACGCCGGCATTCAGCTAACAGAGG CCCAGCGTAAGCAGTTAGTGGACTCGTTAGCCTCAAATGATGGTTTAACTCCCTACGCATTTGGCAATGCAGGCATTATT TCACCGATGGCCAAGGATAATGAGGGCGAAGAGCTGCGTTTTAAGCTGACCCACAATATTTATTTCACCGATAACTTGTT TTTGAATCAACAATTGCAGTATCGCGATTACACCTCAGGCTTTGCTCGCCAAACGGGTGCCTATAACTATGTGTATTGGG ACCGCCGAGGTGTGATTAATGCCGACCCTCGAGCACCACTTGTCGAAGATGGTGTGCTTTATCCCTATGCCGCTCGTCGT CAGGAGTATCGTAAAGTGGATGCCGATGAATCATCCTGGCAGTATTTTGCAGATCTTCGTTATGACTTCCAAATAGGCGA TATTGATAATGAATTATTGATAAATGCCAACTATGAAGATAGAGACATCGCGTTCAAGCAATACTCCATCTACGATGCTG ATAAAGTCATCAAGAATAAAGCCGGTGAGGTGATCTACCAAGGCAGCCTGCCGTACATTTATGATATCCGTAACCCTAAT TGGGCGGAAGGTAGCTTCGAAGATCATGATCCGCTACTAACCAGCAACTACGACAAGAAAGTCAGTGCTTGGGGAGTGGG TGTACAGCATGTGGGGTACTTAGGTTATGGCTTTACTTCTCGCATTGGCGTGGCGTTTAATCAAATTAAGCAGACCTATG AGCACTTAGGCGTCGACTCTAGATACAGTGCCAGCCGCGCCCAACCAACACCAGAAGCCGATACCACTGATGATGGCATG ACCTATAACTTAGGTTTGACTTACATGCCAACCGACGACTTGTCGTTTTTCGTTAATCACTCGAAAGGGCGCACAGCCTA TAGCATTCTTGGCAGCATTGCCGGAAACGATACCGATAGAGATGACAGTGAATCGGTCAGTGATGACTTAGGGATGCGCT TTAAAGCTTTTGATGATCAAATGTTGACTTCAATTGTGTTGTTTAAGAGTTCACGTACTAATTTGCAATACACAAATGTG GATTATGAAGAGGGCGTGTCTGGGCCGAACGTAGCTAAGTATTTCTATAATGGCAGCGAAGAAACCACGGGTGTTGAGCT GGATATGAACGCTCACCTCAATGAGCAGTGGATGGTTAACGTTAATGCGGTTTATCAAGATGCCCGCGACAAGAAAGATC CTAATCGTTCTAGCTATGATACCCGCCAAAAAGGTGTTCCTTATGTCACGGCAAGTGCTTGGGTAACCTATGGGGCTGAT TGGTTCTCACTATCCAGTCCAATTAACATCAGCCTTGGCGCCAAGTATGTTGACGACAGAAGTACTAACTCAACCTCATT TGGTATTCCAGACGGCTATGTGCCAAGTTATACCGTGCTAGATAGTGCGATTAGCTATGATGTTGACAGCTGGAAGCTGC AGTTGAATGTGAACAACTTATTCAATGAAGAGTATTACAGTAAGGCTATGTTCTTAGGCGGTATGCCGGGCGAAGAGCGC AATGCCAAGCTGACACTGACCTATCGTTTATAG
Upstream 100 bases:
>100_bases TCACAAACAAATCCCAGATGTATCAGTGCTGAAACAAGTGTTGAAAAGCTAATGATAATCGTTATCATCTCGCCGCATAA TACTAAAGTGGGGTTATTTG
Downstream 100 bases:
>100_bases ATCCAGATTAAGCGTGATTTTAGCCGAATAAAAAATGCAGCCTAGGCTGCATTTTTTATTCGTGCTATATCATCAAGCTA AGTGCTAGAACTGATAGTTC
Product: TonB-dependent receptor plug
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 810; Mature: 810
Protein sequence:
>810_residues MKHFRYSMLAIACASTFLPTSVYAEVTDTALDNVERITVYGRQNQVVMNSGLATKSDMSLMETPAAVVVVDQELIQAQAL TNLQDLVRNISGVTQAGNNYGIGDNLVIRGLGANYTYDGMYGGAGLGNTFNPTRSLTNVESVEVLKGPATGLYGMGSAGG VINLIEKKPQFESKHAFTAEVGQWNTYSLEADSTAAITDDLAYRVVAKTARSDGYRDIGTDRDEIYTSLKYVLDDSQDLM LSASYIKDAIAVDSIGHPIRIFNSASVGGKTAGEVSWEDLINDPNNAGIQLTEAQRKQLVDSLASNDGLTPYAFGNAGII SPMAKDNEGEELRFKLTHNIYFTDNLFLNQQLQYRDYTSGFARQTGAYNYVYWDRRGVINADPRAPLVEDGVLYPYAARR QEYRKVDADESSWQYFADLRYDFQIGDIDNELLINANYEDRDIAFKQYSIYDADKVIKNKAGEVIYQGSLPYIYDIRNPN WAEGSFEDHDPLLTSNYDKKVSAWGVGVQHVGYLGYGFTSRIGVAFNQIKQTYEHLGVDSRYSASRAQPTPEADTTDDGM TYNLGLTYMPTDDLSFFVNHSKGRTAYSILGSIAGNDTDRDDSESVSDDLGMRFKAFDDQMLTSIVLFKSSRTNLQYTNV DYEEGVSGPNVAKYFYNGSEETTGVELDMNAHLNEQWMVNVNAVYQDARDKKDPNRSSYDTRQKGVPYVTASAWVTYGAD WFSLSSPINISLGAKYVDDRSTNSTSFGIPDGYVPSYTVLDSAISYDVDSWKLQLNVNNLFNEEYYSKAMFLGGMPGEER NAKLTLTYRL
Sequences:
>Translated_810_residues MKHFRYSMLAIACASTFLPTSVYAEVTDTALDNVERITVYGRQNQVVMNSGLATKSDMSLMETPAAVVVVDQELIQAQAL TNLQDLVRNISGVTQAGNNYGIGDNLVIRGLGANYTYDGMYGGAGLGNTFNPTRSLTNVESVEVLKGPATGLYGMGSAGG VINLIEKKPQFESKHAFTAEVGQWNTYSLEADSTAAITDDLAYRVVAKTARSDGYRDIGTDRDEIYTSLKYVLDDSQDLM LSASYIKDAIAVDSIGHPIRIFNSASVGGKTAGEVSWEDLINDPNNAGIQLTEAQRKQLVDSLASNDGLTPYAFGNAGII SPMAKDNEGEELRFKLTHNIYFTDNLFLNQQLQYRDYTSGFARQTGAYNYVYWDRRGVINADPRAPLVEDGVLYPYAARR QEYRKVDADESSWQYFADLRYDFQIGDIDNELLINANYEDRDIAFKQYSIYDADKVIKNKAGEVIYQGSLPYIYDIRNPN WAEGSFEDHDPLLTSNYDKKVSAWGVGVQHVGYLGYGFTSRIGVAFNQIKQTYEHLGVDSRYSASRAQPTPEADTTDDGM TYNLGLTYMPTDDLSFFVNHSKGRTAYSILGSIAGNDTDRDDSESVSDDLGMRFKAFDDQMLTSIVLFKSSRTNLQYTNV DYEEGVSGPNVAKYFYNGSEETTGVELDMNAHLNEQWMVNVNAVYQDARDKKDPNRSSYDTRQKGVPYVTASAWVTYGAD WFSLSSPINISLGAKYVDDRSTNSTSFGIPDGYVPSYTVLDSAISYDVDSWKLQLNVNNLFNEEYYSKAMFLGGMPGEER NAKLTLTYRL >Mature_810_residues MKHFRYSMLAIACASTFLPTSVYAEVTDTALDNVERITVYGRQNQVVMNSGLATKSDMSLMETPAAVVVVDQELIQAQAL TNLQDLVRNISGVTQAGNNYGIGDNLVIRGLGANYTYDGMYGGAGLGNTFNPTRSLTNVESVEVLKGPATGLYGMGSAGG VINLIEKKPQFESKHAFTAEVGQWNTYSLEADSTAAITDDLAYRVVAKTARSDGYRDIGTDRDEIYTSLKYVLDDSQDLM LSASYIKDAIAVDSIGHPIRIFNSASVGGKTAGEVSWEDLINDPNNAGIQLTEAQRKQLVDSLASNDGLTPYAFGNAGII SPMAKDNEGEELRFKLTHNIYFTDNLFLNQQLQYRDYTSGFARQTGAYNYVYWDRRGVINADPRAPLVEDGVLYPYAARR QEYRKVDADESSWQYFADLRYDFQIGDIDNELLINANYEDRDIAFKQYSIYDADKVIKNKAGEVIYQGSLPYIYDIRNPN WAEGSFEDHDPLLTSNYDKKVSAWGVGVQHVGYLGYGFTSRIGVAFNQIKQTYEHLGVDSRYSASRAQPTPEADTTDDGM TYNLGLTYMPTDDLSFFVNHSKGRTAYSILGSIAGNDTDRDDSESVSDDLGMRFKAFDDQMLTSIVLFKSSRTNLQYTNV DYEEGVSGPNVAKYFYNGSEETTGVELDMNAHLNEQWMVNVNAVYQDARDKKDPNRSSYDTRQKGVPYVTASAWVTYGAD WFSLSSPINISLGAKYVDDRSTNSTSFGIPDGYVPSYTVLDSAISYDVDSWKLQLNVNNLFNEEYYSKAMFLGGMPGEER NAKLTLTYRL
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787723, Length=205, Percent_Identity=31.7073170731707, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 90082; Mature: 90082
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHFRYSMLAIACASTFLPTSVYAEVTDTALDNVERITVYGRQNQVVMNSGLATKSDMSL CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCHH METPAAVVVVDQELIQAQALTNLQDLVRNISGVTQAGNNYGIGDNLVIRGLGANYTYDGM HHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEECCC YGGAGLGNTFNPTRSLTNVESVEVLKGPATGLYGMGSAGGVINLIEKKPQFESKHAFTAE CCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEE VGQWNTYSLEADSTAAITDDLAYRVVAKTARSDGYRDIGTDRDEIYTSLKYVLDDSQDLM CCCCEEEEECCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHE LSASYIKDAIAVDSIGHPIRIFNSASVGGKTAGEVSWEDLINDPNNAGIQLTEAQRKQLV EEHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCEEEEHHHHHHHH DSLASNDGLTPYAFGNAGIISPMAKDNEGEELRFKLTHNIYFTDNLFLNQQLQYRDYTSG HHHHCCCCCCEEECCCCCEECCCCCCCCCCEEEEEEEEEEEEECCEEECCEECCCHHHCH FARQTGAYNYVYWDRRGVINADPRAPLVEDGVLYPYAARRQEYRKVDADESSWQYFADLR HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCHHHHHHHHCCCCCCCCCEEEEEEE YDFQIGDIDNELLINANYEDRDIAFKQYSIYDADKVIKNKAGEVIYQGSLPYIYDIRNPN EEEEECCCCCEEEEECCCCCCCEEEEEEEECCHHHHHHCCCCCEEEECCCCEEEECCCCC WAEGSFEDHDPLLTSNYDKKVSAWGVGVQHVGYLGYGFTSRIGVAFNQIKQTYEHLGVDS CCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCC RYSASRAQPTPEADTTDDGMTYNLGLTYMPTDDLSFFVNHSKGRTAYSILGSIAGNDTDR CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHCCCCCCC DDSESVSDDLGMRFKAFDDQMLTSIVLFKSSRTNLQYTNVDYEEGVSGPNVAKYFYNGSE CCCHHHHHHHCCEEEHHHHHHHHHHHEEECCCCCEEEECCCHHHCCCCCCEEEEEECCCC ETTGVELDMNAHLNEQWMVNVNAVYQDARDKKDPNRSSYDTRQKGVPYVTASAWVTYGAD CCCCEEEEECCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCHHHCCCCEEEECCEEEECCC WFSLSSPINISLGAKYVDDRSTNSTSFGIPDGYVPSYTVLDSAISYDVDSWKLQLNVNNL CEECCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEHHHH FNEEYYSKAMFLGGMPGEERNAKLTLTYRL HCHHHHHHHHEECCCCCCCCCCEEEEEEEC >Mature Secondary Structure MKHFRYSMLAIACASTFLPTSVYAEVTDTALDNVERITVYGRQNQVVMNSGLATKSDMSL CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCHH METPAAVVVVDQELIQAQALTNLQDLVRNISGVTQAGNNYGIGDNLVIRGLGANYTYDGM HHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEECCC YGGAGLGNTFNPTRSLTNVESVEVLKGPATGLYGMGSAGGVINLIEKKPQFESKHAFTAE CCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEE VGQWNTYSLEADSTAAITDDLAYRVVAKTARSDGYRDIGTDRDEIYTSLKYVLDDSQDLM CCCCEEEEECCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHE LSASYIKDAIAVDSIGHPIRIFNSASVGGKTAGEVSWEDLINDPNNAGIQLTEAQRKQLV EEHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCEEEEHHHHHHHH DSLASNDGLTPYAFGNAGIISPMAKDNEGEELRFKLTHNIYFTDNLFLNQQLQYRDYTSG HHHHCCCCCCEEECCCCCEECCCCCCCCCCEEEEEEEEEEEEECCEEECCEECCCHHHCH FARQTGAYNYVYWDRRGVINADPRAPLVEDGVLYPYAARRQEYRKVDADESSWQYFADLR HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCHHHHHHHHCCCCCCCCCEEEEEEE YDFQIGDIDNELLINANYEDRDIAFKQYSIYDADKVIKNKAGEVIYQGSLPYIYDIRNPN EEEEECCCCCEEEEECCCCCCCEEEEEEEECCHHHHHHCCCCCEEEECCCCEEEECCCCC WAEGSFEDHDPLLTSNYDKKVSAWGVGVQHVGYLGYGFTSRIGVAFNQIKQTYEHLGVDS CCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCC RYSASRAQPTPEADTTDDGMTYNLGLTYMPTDDLSFFVNHSKGRTAYSILGSIAGNDTDR CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHCCCCCCC DDSESVSDDLGMRFKAFDDQMLTSIVLFKSSRTNLQYTNVDYEEGVSGPNVAKYFYNGSE CCCHHHHHHHCCEEEHHHHHHHHHHHEEECCCCCEEEECCCHHHCCCCCCEEEEEECCCC ETTGVELDMNAHLNEQWMVNVNAVYQDARDKKDPNRSSYDTRQKGVPYVTASAWVTYGAD CCCCEEEEECCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCHHHCCCCEEEECCEEEECCC WFSLSSPINISLGAKYVDDRSTNSTSFGIPDGYVPSYTVLDSAISYDVDSWKLQLNVNNL CEECCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEHHHH FNEEYYSKAMFLGGMPGEERNAKLTLTYRL HCHHHHHHHHEECCCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]