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The map label for this gene is yciR [C]

Identifier: 157962540

GI number: 157962540

Start: 3323983

End: 3325482

Strand: Reverse

Name: yciR [C]

Synonym: Spea_2719

Alternate gene names: 157962540

Gene position: 3325482-3323983 (Counterclockwise)

Preceding gene: 157962541

Following gene: 157962538

Centisome position: 64.27

GC content: 38.13

Gene sequence:

>1500_bases
ATGAAAAAGCTCTCTTCTCATATCATCATCCTATACATCTTGCTTACCTTAGTTCCGATGTTGGTGATTGGTGGCTTTAA
TGTCACAAAGAGTTTACTTACCGAGCGAAATGAATGGCGTAGCTTGTATGACAAGGTTTTACTGCAGCAATTGATAAACG
CTGAAAAATCGCTGGTGGAATTTGACCTTAATTTAGCTGAGATAGTCGTTAATGACCTCTCGCGTTTAGATTATATTCGA
GCGGTAAAGCTGGAGTCTGAACTGTATGCCATGACCTTCGCAGAGGTGATTAACTCTAACGTTGAAGAGGAAAAGCTGAC
CTTGCTGACTTATCCTATTTTCGACTCGAGAGGCAGTAGTCTGGGACAGTTAGTGATCTATAAAGATAATGATGCTTTAA
GGTCCCATGTTTATTCTACTGTATTACCTAAGACACTATTTTTTGTGGTTTTAGTGAGTTTTATCTCATTTCTCTTTAGC
CATAAAATACTGTCGATCTTTAAGAGGCCCTTTAAAGATGTGCACCAATTCACACGCTTGGTCGCCAGTGGTGAGTTTGA
GGTTCCACCTCCGGTACACAATAAATTTATAGAGATCAATGCTATCTTCTTATCTTTAGATATGATGCGCGTCAGATTAC
TGAACTCTGTCAATCAGTTGAAGCAGAGCGAAGAGCGCTACTCTAGAACATATAATTTGACTCAAGTTTGTTTATTCGTT
ATTGATGTAAAAACATGCAAAATCATAAGAGCAAACCAAACATTTACTCAATTAGTCAGCGATGTAGAAACGATTAACTG
TGTGTATGCAGCAAGGTTAAAGCGCTTTATTACTCAGCTATTGCAGCGTAAAGGTGGTCATAGTTTCGAATACACAATTA
ATGTGAAAGGGGCTGTAAAGCATTTCCAAATTAATTATTCTGAGCGTATACAAGATGAGATTGAATGTTCAGGATTAGAT
ATTAGTGAACTAATTGAAGCGAGAGAGTCGGTAGAGTTGCAGTTACAAACAGATCCATTAACTGGGATCCCCAATCGTGT
AAGGTTTAATCAATTTATTCAGCAAGTAGAGAAGAATAAACACGAAAGGTTTACTTTTATGATGTTGGATCTTGATGGCT
TTAAGGCCATTAATGATAATTATGGTCACCGAGTAGGTGATGTAGCTTTACAGACTATAGCCTTGCGAATCGCAAATTGT
ATTCAGGCATACGGTCGCGTTTATCGTTTAGGCGGCGATGAGTTCATTGTGAGCATAACAGACGATTATAGTCGAGATAA
ATTGCAGCTAATTGCTCATTCCATTATGCTGCTGATCGAGGCACCAATTCATTATGAAGATAAGATATTCGCTATCTCTT
CGAGTATTGGTATTAGCCGTTATGACGCGAAAGATACAGTATCAGTTGACCACATATTGAATGAAGCTGATATGGCCATG
TATCACGCCAAAATTAATCAAGTTTCCCCTATTTTTTCAGATGAGTTATGTCTTGTCTAA

Upstream 100 bases:

>100_bases
GCAAAAAGGATAAAGAGTTAATTAGCGATCTTATCATTCAGTTAAAGGGGAAGAACAACGCCATTTCACGTGAAATCATA
ACTCAATGTGAGATAGGAAG

Downstream 100 bases:

>100_bases
TCACTTGAACCTGCTCATTTTTCTACACAGTTTTTCCTGCGCTGGATAGTCGATAGCCAATAACTGAAACTGGTAATCCC
CTAGAACGCTTGGCTCTTCA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 499

Protein sequence:

>499_residues
MKKLSSHIIILYILLTLVPMLVIGGFNVTKSLLTERNEWRSLYDKVLLQQLINAEKSLVEFDLNLAEIVVNDLSRLDYIR
AVKLESELYAMTFAEVINSNVEEEKLTLLTYPIFDSRGSSLGQLVIYKDNDALRSHVYSTVLPKTLFFVVLVSFISFLFS
HKILSIFKRPFKDVHQFTRLVASGEFEVPPPVHNKFIEINAIFLSLDMMRVRLLNSVNQLKQSEERYSRTYNLTQVCLFV
IDVKTCKIIRANQTFTQLVSDVETINCVYAARLKRFITQLLQRKGGHSFEYTINVKGAVKHFQINYSERIQDEIECSGLD
ISELIEARESVELQLQTDPLTGIPNRVRFNQFIQQVEKNKHERFTFMMLDLDGFKAINDNYGHRVGDVALQTIALRIANC
IQAYGRVYRLGGDEFIVSITDDYSRDKLQLIAHSIMLLIEAPIHYEDKIFAISSSIGISRYDAKDTVSVDHILNEADMAM
YHAKINQVSPIFSDELCLV

Sequences:

>Translated_499_residues
MKKLSSHIIILYILLTLVPMLVIGGFNVTKSLLTERNEWRSLYDKVLLQQLINAEKSLVEFDLNLAEIVVNDLSRLDYIR
AVKLESELYAMTFAEVINSNVEEEKLTLLTYPIFDSRGSSLGQLVIYKDNDALRSHVYSTVLPKTLFFVVLVSFISFLFS
HKILSIFKRPFKDVHQFTRLVASGEFEVPPPVHNKFIEINAIFLSLDMMRVRLLNSVNQLKQSEERYSRTYNLTQVCLFV
IDVKTCKIIRANQTFTQLVSDVETINCVYAARLKRFITQLLQRKGGHSFEYTINVKGAVKHFQINYSERIQDEIECSGLD
ISELIEARESVELQLQTDPLTGIPNRVRFNQFIQQVEKNKHERFTFMMLDLDGFKAINDNYGHRVGDVALQTIALRIANC
IQAYGRVYRLGGDEFIVSITDDYSRDKLQLIAHSIMLLIEAPIHYEDKIFAISSSIGISRYDAKDTVSVDHILNEADMAM
YHAKINQVSPIFSDELCLV
>Mature_499_residues
MKKLSSHIIILYILLTLVPMLVIGGFNVTKSLLTERNEWRSLYDKVLLQQLINAEKSLVEFDLNLAEIVVNDLSRLDYIR
AVKLESELYAMTFAEVINSNVEEEKLTLLTYPIFDSRGSSLGQLVIYKDNDALRSHVYSTVLPKTLFFVVLVSFISFLFS
HKILSIFKRPFKDVHQFTRLVASGEFEVPPPVHNKFIEINAIFLSLDMMRVRLLNSVNQLKQSEERYSRTYNLTQVCLFV
IDVKTCKIIRANQTFTQLVSDVETINCVYAARLKRFITQLLQRKGGHSFEYTINVKGAVKHFQINYSERIQDEIECSGLD
ISELIEARESVELQLQTDPLTGIPNRVRFNQFIQQVEKNKHERFTFMMLDLDGFKAINDNYGHRVGDVALQTIALRIANC
IQAYGRVYRLGGDEFIVSITDDYSRDKLQLIAHSIMLLIEAPIHYEDKIFAISSSIGISRYDAKDTVSVDHILNEADMAM
YHAKINQVSPIFSDELCLV

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=170, Percent_Identity=34.1176470588235, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788956, Length=202, Percent_Identity=31.6831683168317, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787816, Length=148, Percent_Identity=32.4324324324324, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081977, Length=169, Percent_Identity=34.9112426035503, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=160, Percent_Identity=31.875, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788381, Length=151, Percent_Identity=29.1390728476821, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081881, Length=289, Percent_Identity=23.8754325259516, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787262, Length=152, Percent_Identity=32.8947368421053, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 57352; Mature: 57352

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLSSHIIILYILLTLVPMLVIGGFNVTKSLLTERNEWRSLYDKVLLQQLINAEKSLVE
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
FDLNLAEIVVNDLSRLDYIRAVKLESELYAMTFAEVINSNVEEEKLTLLTYPIFDSRGSS
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC
LGQLVIYKDNDALRSHVYSTVLPKTLFFVVLVSFISFLFSHKILSIFKRPFKDVHQFTRL
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VASGEFEVPPPVHNKFIEINAIFLSLDMMRVRLLNSVNQLKQSEERYSRTYNLTQVCLFV
HHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
IDVKTCKIIRANQTFTQLVSDVETINCVYAARLKRFITQLLQRKGGHSFEYTINVKGAVK
HHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECEE
HFQINYSERIQDEIECSGLDISELIEARESVELQLQTDPLTGIPNRVRFNQFIQQVEKNK
EEEECHHHHHHHHHCCCCCCHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHHCCC
HERFTFMMLDLDGFKAINDNYGHRVGDVALQTIALRIANCIQAYGRVYRLGGDEFIVSIT
CCEEEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEEEC
DDYSRDKLQLIAHSIMLLIEAPIHYEDKIFAISSSIGISRYDAKDTVSVDHILNEADMAM
CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEECCCCCCCCHHHHHCHHHHHH
YHAKINQVSPIFSDELCLV
HHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKKLSSHIIILYILLTLVPMLVIGGFNVTKSLLTERNEWRSLYDKVLLQQLINAEKSLVE
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
FDLNLAEIVVNDLSRLDYIRAVKLESELYAMTFAEVINSNVEEEKLTLLTYPIFDSRGSS
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC
LGQLVIYKDNDALRSHVYSTVLPKTLFFVVLVSFISFLFSHKILSIFKRPFKDVHQFTRL
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VASGEFEVPPPVHNKFIEINAIFLSLDMMRVRLLNSVNQLKQSEERYSRTYNLTQVCLFV
HHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
IDVKTCKIIRANQTFTQLVSDVETINCVYAARLKRFITQLLQRKGGHSFEYTINVKGAVK
HHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECEE
HFQINYSERIQDEIECSGLDISELIEARESVELQLQTDPLTGIPNRVRFNQFIQQVEKNK
EEEECHHHHHHHHHCCCCCCHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHHCCC
HERFTFMMLDLDGFKAINDNYGHRVGDVALQTIALRIANCIQAYGRVYRLGGDEFIVSIT
CCEEEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEEEC
DDYSRDKLQLIAHSIMLLIEAPIHYEDKIFAISSSIGISRYDAKDTVSVDHILNEADMAM
CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEECCCCCCCCHHHHHCHHHHHH
YHAKINQVSPIFSDELCLV
HHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]