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The map label for this gene is yciR [C]

Identifier: 157962165

GI number: 157962165

Start: 2855384

End: 2857558

Strand: Reverse

Name: yciR [C]

Synonym: Spea_2344

Alternate gene names: 157962165

Gene position: 2857558-2855384 (Counterclockwise)

Preceding gene: 157962166

Following gene: 157962162

Centisome position: 55.22

GC content: 41.98

Gene sequence:

>2175_bases
GTGAAGAAACATAAATTTCAGCAATTGTTGGAGTACATTGTTAATTCAGAAGCAAAGATGTTGGGCGACTTTAAGTCAAC
AGCACAAATTGCGGCTGAATTACTTTCTCAGCAACTTAGTGTTTCGAGTGTTGTCGTCTCTGCGTTGTCAGCTGACACGG
ATACACTGACACAAATCACACGCCTCAATACTTCTCCAAATTCATCAGCACTTACCTCTATTCGCCCAGTCCCTTCCTCT
TGTCCCAATTTTATCAGTCAATTAAAAGATGAACGTCATATTACGGCAGAGCATTGCTGTAGTGACAAGCGACTAATCGA
ACTTCAAGCTTATTACCAGCAACAAGGGATCTTGTCAGTTTTAGAAGTGGCTATTCGTATTAATGGACATTTAGAGGGGA
TGTTAAGTCTTGAGCGCAAAGAGCAGACAGAGCCTTGGAGTGATCTTGAGGTGCAGCTCTGTTCACAAGTCGCAGATCAG
CTAGCATTAACATTAGCGACTCAATACGGCTATGATAAAGATGAGCGCTTAACCCTGTTCTTATCAGCTGCAGAGCAGTC
AGAGCAGATAATGATGGTGGTTAATTTAGCCACTGATCTTATTGAATATGTTAATAAGGCCCATTTTAACTTAACCAAAG
TTCCTAAAGAAAAAGTGTTAGGTCGAAAGGTTCAGGTATTAGACTTTTTCAAACAATATCCCGACTTATCTGATGAGGTG
TTGAAAAAAGCTCGGGAAGGGGAGGCCTCTGAAGAAGAGGTCTATTTAGTCCGCGATGATGGCAGTTCTTACTGGATGCG
TTTTTCGGTAAAGCGCTTTATCTCTGAAAGGGGCAACCATTTTGCCTTAGTTAATGCAGAAAATTGTACTGAAGAGCACT
ATCATCAAAATGAGTTATTTCGTCTAGCTTGGCGCTGTAGCTTAACTGGGTTATATAATCGAACACACTTCAGTCGAGTC
CTTGAAAAATCGCATACTGGCCATTTAGTCATGATCGATCTTAGAGGGTTTAAACGTTTTAACGATACCTATGGTCATGC
AAATGGCGATATCATCTTAGTTGAAATCGCCCGACGAATTCGCCATTTTGCCGAAGTAAATAAAATTTCAGAGGTCGCAC
GAATAGGAAGTGATGAGTTTGGGATTTTGTTTGAAAGTGGATCAAGTGAAGCTTGGATAGAGCAGGCAACTGAGCGATTA
TATCATCAGCTTGAAGCGACGATTACCATTGGAATTGAGCAAATTGAACCAAGGCCGGCTTTAGCTAGAGTCGATCTTTC
CTCGATTGAGCAGAAGTTTTCGGCTTTGACCTGTGCAGACATCGCCATTCAATATGCCAAAAATCGGCAAGGTAATGCTA
TCCAGTTGTTTAACTCTGCCTTGTTAAATGCATTTAAAGAAGATGCTCAAATTGAAAGAGACCTAGCCCTCGCGATAAAA
GGGCGTCAATTTGAACTGTATTATCAACCACTCAAAGATTTGGCAACTCAGTCTTATATCGGTGCAGAAGCATTACTCCG
TTGGCACCATCCAAAGAAAGGCGTGCTCTACCCTGGAGCTTTCATCGATATTGCCGAACAAACGGGACTGATTAACGATA
TTGGTTCATGGGTGCTTGAAGCGGCATGTAAACAGTTAAACCTTTGGCAACGCCATCAAATTGATATATCCATGCACGTA
AACGTGTCTGCAAGACAGTTTTTTAGCAGTAACTTGTTTGAGCAGGTTTGGGAGCTTGTAACCCGCTATCGTTTAAAACC
AAATAGTTTGATCCTTGAAATCACCGAAACTGAGTTAATGGAAGATATTCGCTCTGCAACTAATTTGTGTCACGAGCTAG
CAGCACTCGGCGTTGGACTCGCCATTGATGATTTTGGTACTGGCTATAGTTCGATGAGATACTTAAAACAGTTCCCAATT
AGTAAGTTGAAAATTGATCGCTCATTTATCTCAGACCTTTCTGTCAGTCGTGAAAGCCGAGAAATAGTGAGTGCTATTAT
TGCAATGGCATCGGCACTCAATATCTCGCTCACCGCTGAAGGTGTCGAAACAAAAGAGCAGGAGCAGTTCCTCGCTAAAC
ACTTGTGTCATCAAGCACAAGGCTTCTTATATAGCCCAGCCCTACGAGTATCCGAGTTCGGTCAGTTTTTACAAAAATCC
TCAGCGATCCATTAG

Upstream 100 bases:

>100_bases
GCGTTAACTCGTGTAATCTTGTACCCTATAAAAATAATATATTAGCTTTAATTTTAAAGCTATTTGGTAAGCTCTTTGCT
TACCCTATTTAGGATTACGT

Downstream 100 bases:

>100_bases
TCTTGTGCCATATCAAAGATTGCTTGATACGATAAAGCCGAATTTATCGGCTCTATCTGTGGGTAATTAGCCAAACACTA
AACGATTTACTTCATGTTTT

Product: PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 724; Mature: 724

Protein sequence:

>724_residues
MKKHKFQQLLEYIVNSEAKMLGDFKSTAQIAAELLSQQLSVSSVVVSALSADTDTLTQITRLNTSPNSSALTSIRPVPSS
CPNFISQLKDERHITAEHCCSDKRLIELQAYYQQQGILSVLEVAIRINGHLEGMLSLERKEQTEPWSDLEVQLCSQVADQ
LALTLATQYGYDKDERLTLFLSAAEQSEQIMMVVNLATDLIEYVNKAHFNLTKVPKEKVLGRKVQVLDFFKQYPDLSDEV
LKKAREGEASEEEVYLVRDDGSSYWMRFSVKRFISERGNHFALVNAENCTEEHYHQNELFRLAWRCSLTGLYNRTHFSRV
LEKSHTGHLVMIDLRGFKRFNDTYGHANGDIILVEIARRIRHFAEVNKISEVARIGSDEFGILFESGSSEAWIEQATERL
YHQLEATITIGIEQIEPRPALARVDLSSIEQKFSALTCADIAIQYAKNRQGNAIQLFNSALLNAFKEDAQIERDLALAIK
GRQFELYYQPLKDLATQSYIGAEALLRWHHPKKGVLYPGAFIDIAEQTGLINDIGSWVLEAACKQLNLWQRHQIDISMHV
NVSARQFFSSNLFEQVWELVTRYRLKPNSLILEITETELMEDIRSATNLCHELAALGVGLAIDDFGTGYSSMRYLKQFPI
SKLKIDRSFISDLSVSRESREIVSAIIAMASALNISLTAEGVETKEQEQFLAKHLCHQAQGFLYSPALRVSEFGQFLQKS
SAIH

Sequences:

>Translated_724_residues
MKKHKFQQLLEYIVNSEAKMLGDFKSTAQIAAELLSQQLSVSSVVVSALSADTDTLTQITRLNTSPNSSALTSIRPVPSS
CPNFISQLKDERHITAEHCCSDKRLIELQAYYQQQGILSVLEVAIRINGHLEGMLSLERKEQTEPWSDLEVQLCSQVADQ
LALTLATQYGYDKDERLTLFLSAAEQSEQIMMVVNLATDLIEYVNKAHFNLTKVPKEKVLGRKVQVLDFFKQYPDLSDEV
LKKAREGEASEEEVYLVRDDGSSYWMRFSVKRFISERGNHFALVNAENCTEEHYHQNELFRLAWRCSLTGLYNRTHFSRV
LEKSHTGHLVMIDLRGFKRFNDTYGHANGDIILVEIARRIRHFAEVNKISEVARIGSDEFGILFESGSSEAWIEQATERL
YHQLEATITIGIEQIEPRPALARVDLSSIEQKFSALTCADIAIQYAKNRQGNAIQLFNSALLNAFKEDAQIERDLALAIK
GRQFELYYQPLKDLATQSYIGAEALLRWHHPKKGVLYPGAFIDIAEQTGLINDIGSWVLEAACKQLNLWQRHQIDISMHV
NVSARQFFSSNLFEQVWELVTRYRLKPNSLILEITETELMEDIRSATNLCHELAALGVGLAIDDFGTGYSSMRYLKQFPI
SKLKIDRSFISDLSVSRESREIVSAIIAMASALNISLTAEGVETKEQEQFLAKHLCHQAQGFLYSPALRVSEFGQFLQKS
SAIH
>Mature_724_residues
MKKHKFQQLLEYIVNSEAKMLGDFKSTAQIAAELLSQQLSVSSVVVSALSADTDTLTQITRLNTSPNSSALTSIRPVPSS
CPNFISQLKDERHITAEHCCSDKRLIELQAYYQQQGILSVLEVAIRINGHLEGMLSLERKEQTEPWSDLEVQLCSQVADQ
LALTLATQYGYDKDERLTLFLSAAEQSEQIMMVVNLATDLIEYVNKAHFNLTKVPKEKVLGRKVQVLDFFKQYPDLSDEV
LKKAREGEASEEEVYLVRDDGSSYWMRFSVKRFISERGNHFALVNAENCTEEHYHQNELFRLAWRCSLTGLYNRTHFSRV
LEKSHTGHLVMIDLRGFKRFNDTYGHANGDIILVEIARRIRHFAEVNKISEVARIGSDEFGILFESGSSEAWIEQATERL
YHQLEATITIGIEQIEPRPALARVDLSSIEQKFSALTCADIAIQYAKNRQGNAIQLFNSALLNAFKEDAQIERDLALAIK
GRQFELYYQPLKDLATQSYIGAEALLRWHHPKKGVLYPGAFIDIAEQTGLINDIGSWVLEAACKQLNLWQRHQIDISMHV
NVSARQFFSSNLFEQVWELVTRYRLKPNSLILEITETELMEDIRSATNLCHELAALGVGLAIDDFGTGYSSMRYLKQFPI
SKLKIDRSFISDLSVSRESREIVSAIIAMASALNISLTAEGVETKEQEQFLAKHLCHQAQGFLYSPALRVSEFGQFLQKS
SAIH

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=485, Percent_Identity=30.1030927835052, Blast_Score=209, Evalue=6e-55,
Organism=Escherichia coli, GI226510982, Length=439, Percent_Identity=31.2072892938497, Blast_Score=196, Evalue=4e-51,
Organism=Escherichia coli, GI87081921, Length=418, Percent_Identity=31.3397129186603, Blast_Score=192, Evalue=7e-50,
Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=33.8645418326693, Blast_Score=152, Evalue=7e-38,
Organism=Escherichia coli, GI87081743, Length=236, Percent_Identity=33.4745762711864, Blast_Score=146, Evalue=5e-36,
Organism=Escherichia coli, GI87081980, Length=256, Percent_Identity=35.9375, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1786507, Length=241, Percent_Identity=33.6099585062241, Blast_Score=143, Evalue=4e-35,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=32.9317269076305, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI1787055, Length=262, Percent_Identity=33.969465648855, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI87081845, Length=261, Percent_Identity=31.4176245210728, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI87082096, Length=218, Percent_Identity=30.2752293577982, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1788849, Length=242, Percent_Identity=28.099173553719, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1787410, Length=123, Percent_Identity=30.8943089430894, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788956, Length=133, Percent_Identity=32.3308270676692, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1788381, Length=232, Percent_Identity=26.7241379310345, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 82120; Mature: 82120

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS00639 THIOL_PROTEASE_HIS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHKFQQLLEYIVNSEAKMLGDFKSTAQIAAELLSQQLSVSSVVVSALSADTDTLTQIT
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
RLNTSPNSSALTSIRPVPSSCPNFISQLKDERHITAEHCCSDKRLIELQAYYQQQGILSV
HCCCCCCCCHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHCCHHHH
LEVAIRINGHLEGMLSLERKEQTEPWSDLEVQLCSQVADQLALTLATQYGYDKDERLTLF
HHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
LSAAEQSEQIMMVVNLATDLIEYVNKAHFNLTKVPKEKVLGRKVQVLDFFKQYPDLSDEV
EECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCHHH
LKKAREGEASEEEVYLVRDDGSSYWMRFSVKRFISERGNHFALVNAENCTEEHYHQNELF
HHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH
RLAWRCSLTGLYNRTHFSRVLEKSHTGHLVMIDLRGFKRFNDTYGHANGDIILVEIARRI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCEEHHHHHHHH
RHFAEVNKISEVARIGSDEFGILFESGSSEAWIEQATERLYHQLEATITIGIEQIEPRPA
HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEHHHCCCCCC
LARVDLSSIEQKFSALTCADIAIQYAKNRQGNAIQLFNSALLNAFKEDAQIERDLALAIK
HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEE
GRQFELYYQPLKDLATQSYIGAEALLRWHHPKKGVLYPGAFIDIAEQTGLINDIGSWVLE
CCEEEEHHHHHHHHHHHHHHCHHHHHHHCCCCCCEECCCHHHHHHHHCCCHHHHHHHHHH
AACKQLNLWQRHQIDISMHVNVSARQFFSSNLFEQVWELVTRYRLKPNSLILEITETELM
HHHHHCCCHHHEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHH
EDIRSATNLCHELAALGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLSVSRESR
HHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHH
EIVSAIIAMASALNISLTAEGVETKEQEQFLAKHLCHQAQGFLYSPALRVSEFGQFLQKS
HHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHC
SAIH
CCCC
>Mature Secondary Structure
MKKHKFQQLLEYIVNSEAKMLGDFKSTAQIAAELLSQQLSVSSVVVSALSADTDTLTQIT
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
RLNTSPNSSALTSIRPVPSSCPNFISQLKDERHITAEHCCSDKRLIELQAYYQQQGILSV
HCCCCCCCCHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHCCHHHH
LEVAIRINGHLEGMLSLERKEQTEPWSDLEVQLCSQVADQLALTLATQYGYDKDERLTLF
HHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
LSAAEQSEQIMMVVNLATDLIEYVNKAHFNLTKVPKEKVLGRKVQVLDFFKQYPDLSDEV
EECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCHHH
LKKAREGEASEEEVYLVRDDGSSYWMRFSVKRFISERGNHFALVNAENCTEEHYHQNELF
HHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH
RLAWRCSLTGLYNRTHFSRVLEKSHTGHLVMIDLRGFKRFNDTYGHANGDIILVEIARRI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCEEHHHHHHHH
RHFAEVNKISEVARIGSDEFGILFESGSSEAWIEQATERLYHQLEATITIGIEQIEPRPA
HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEHHHCCCCCC
LARVDLSSIEQKFSALTCADIAIQYAKNRQGNAIQLFNSALLNAFKEDAQIERDLALAIK
HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEE
GRQFELYYQPLKDLATQSYIGAEALLRWHHPKKGVLYPGAFIDIAEQTGLINDIGSWVLE
CCEEEEHHHHHHHHHHHHHHCHHHHHHHCCCCCCEECCCHHHHHHHHCCCHHHHHHHHHH
AACKQLNLWQRHQIDISMHVNVSARQFFSSNLFEQVWELVTRYRLKPNSLILEITETELM
HHHHHCCCHHHEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHH
EDIRSATNLCHELAALGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLSVSRESR
HHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHH
EIVSAIIAMASALNISLTAEGVETKEQEQFLAKHLCHQAQGFLYSPALRVSEFGQFLQKS
HHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHC
SAIH
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]