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The map label for this gene is yjcF [C]

Identifier: 157962093

GI number: 157962093

Start: 2749502

End: 2751547

Strand: Reverse

Name: yjcF [C]

Synonym: Spea_2272

Alternate gene names: 157962093

Gene position: 2751547-2749502 (Counterclockwise)

Preceding gene: 157962094

Following gene: 157962092

Centisome position: 53.17

GC content: 48.34

Gene sequence:

>2046_bases
GTGCAGACTATCAATGATTACCGCAGCAAGTTTAACGCGTTGTTAGCGTTAACATTTTCTCTCACCTTTGTCACTGCTTG
TGATAGCAACGACAATGAGACTCAAATACAATCAGGCCTTTTAACCGAAAAGGACTTTGCCAATAATAGTCGTTTACGAG
CCAGCCCCGAACAAGGTACCGTTGCTTTATTTCTTGAGCCACCGTCGGCAACGGTAGAAGATGACTCTAATGGCGAGACA
GGCTCTGATCTCATACCTTACCAATATTCGCGTCCCCTCAAGCATACATTTTGCTATGAAGATGGTAACAGCAATTCAAA
TCACTCTATGGTGCTTAATAATAGCAGTGGCGAGGAAGTGCTTAGCATTACAGCCAATGATGAGTGCGTCTCGGCCGTCA
TACCTGCGGGGGAGTTTCAACTAGTACTGACCCACGGTCAGCATGTAGATAGCACAGATACGACCTTCTTAGTGACGACG
CCAGATAGTGGTTCGCAGCCAGAAGCAAATAGCGTTAATTATTCGATTGTTTCCAAACTACTGAGTACCATCGGTAATGT
CCTGATAAGTCCTGCTTATGCCGATACTACAGATGACAATGTGACTACGCTTATTTCCACCAACGCATGCAAGAATTGTG
ATTTGTCAGGCGCAGACCTGGATAATGCAACACTCACATTTGCAGATCTTTCCGGCGCGGATTTAACTGATGCCATATTA
ACCAATGTCGACCTTTTCGAATCAACGCTTACCGGAACCAATTTTAGTGGCGCCGATATGAGCAAGGGTGACTTTCGTGG
TTCGGAAATGACCTATGCAGATCTTAGTAATGCCAATCTGAGTGGGGCTTATTTTTCCAGCGCACAATTATCTCCAGCAG
ACCTTGATAATGCGACCGTCACGGATACAGATTTTGATAACGCTAATCTTGTTGGCGCGACATGGATAGATGGAGGCATT
TGCGATATCACCTCTGTTGGTTTTTGTAATTCAACAGCCGTTGCCGAGTCTGACCCATGCGATTCGGTTAAGCAGGATGT
TACCGATGATGGCAACACCGTCTATAAATGTTTATTGCCAGCCGTTGATAAAGAAGTTTGTAGCACCGAGTATGGTGGAG
TTGATGGCGGCACGCCAATAACTAGCTGTGAAGCAATAGATGCCTCAGATCTGGTTACCTCTGTTAATCTGGTTGATATC
TTCAGCCAGGTTAGCGCATCTTTTGATACCACTCTGGACAACGATACGCCTATGGCCATTTTAGCTTGGGGAGGAGAAGG
TGGCATTGGTTCTAGTGGTGGGCTCTGGACCTCTGGTGGTGATGGTGGTAAGAGTGGTTTTGCCTCGACAGTCACGACGT
TATCTCATTTCCTAGACGATTATGGGCAAACATCATTCAACTTCTTCATCGGTGAAAATGGCACACTGAGTAATATCGAT
GGTGACGGTGGCTCTTCGACACTGGTTATGATTGCAGAAACTAGCCCAGCTTCACTTGAAGACGATGTCATACTTATTGC
CGGCGGTGGTGGAGGTGGTGACTCGTCTGGATGGCTGAACGATGGCACAGATGGTGGTGCTGGTGGCGTTGCAGCCTCAT
CAATCATAGGCCAAGGAACCATTGGCGTAGGCCAAGCCATTATTGATGTTGCAGACGGTGGTAGCACCGATGAATGGGGC
AATGGTGGAAATGGCGCCAATGACGGCAAAGATGGTATTGGTGGCCAAGGCGGACAAGGATTTTTAGGCGCTAATAGTGA
GTGGGTAAATGGCGACCCTGGGGTCGGTTCAAACGGCAGAGGCGGCAATGCAGATGATAGCTTTAGTGCTTCTGGCGGCG
GTGGCGGCGGTGGTGGTTATGGAGGCGGTGGTGCCGGCGATGATGGAGCCGGAGCTGGTGGCGGAAGCTGGTCGGTCATC
CCATCTACGACCTGTAATAGTGCGCCCACTCAAGATACGGCACCTTCGAGCCCAGGCACATCAGGTGATGACTTTGGCAG
TAAAGATGGCGCTATTGAAGTTTGGATATTTCCAAAGGGCTGTTAA

Upstream 100 bases:

>100_bases
AACAATGCCCCGCTCACCAAAGGCTTATGGATAGCCCATTATTACAACTTCATAAAAATCTACAACTTCCGAAGTTCTGT
TCCATTATAAGGAAAATAAC

Downstream 100 bases:

>100_bases
CCACTGTATAGACCGAACTGATGAAACAAGCTGAGAACGGGGGGGTATTTCTTCTGTTCTCAGCCAGCGCGTTTTGTGTG
TTAGCTAAGCTGTTTTAATA

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 681; Mature: 681

Protein sequence:

>681_residues
MQTINDYRSKFNALLALTFSLTFVTACDSNDNETQIQSGLLTEKDFANNSRLRASPEQGTVALFLEPPSATVEDDSNGET
GSDLIPYQYSRPLKHTFCYEDGNSNSNHSMVLNNSSGEEVLSITANDECVSAVIPAGEFQLVLTHGQHVDSTDTTFLVTT
PDSGSQPEANSVNYSIVSKLLSTIGNVLISPAYADTTDDNVTTLISTNACKNCDLSGADLDNATLTFADLSGADLTDAIL
TNVDLFESTLTGTNFSGADMSKGDFRGSEMTYADLSNANLSGAYFSSAQLSPADLDNATVTDTDFDNANLVGATWIDGGI
CDITSVGFCNSTAVAESDPCDSVKQDVTDDGNTVYKCLLPAVDKEVCSTEYGGVDGGTPITSCEAIDASDLVTSVNLVDI
FSQVSASFDTTLDNDTPMAILAWGGEGGIGSSGGLWTSGGDGGKSGFASTVTTLSHFLDDYGQTSFNFFIGENGTLSNID
GDGGSSTLVMIAETSPASLEDDVILIAGGGGGGDSSGWLNDGTDGGAGGVAASSIIGQGTIGVGQAIIDVADGGSTDEWG
NGGNGANDGKDGIGGQGGQGFLGANSEWVNGDPGVGSNGRGGNADDSFSASGGGGGGGGYGGGGAGDDGAGAGGGSWSVI
PSTTCNSAPTQDTAPSSPGTSGDDFGSKDGAIEVWIFPKGC

Sequences:

>Translated_681_residues
MQTINDYRSKFNALLALTFSLTFVTACDSNDNETQIQSGLLTEKDFANNSRLRASPEQGTVALFLEPPSATVEDDSNGET
GSDLIPYQYSRPLKHTFCYEDGNSNSNHSMVLNNSSGEEVLSITANDECVSAVIPAGEFQLVLTHGQHVDSTDTTFLVTT
PDSGSQPEANSVNYSIVSKLLSTIGNVLISPAYADTTDDNVTTLISTNACKNCDLSGADLDNATLTFADLSGADLTDAIL
TNVDLFESTLTGTNFSGADMSKGDFRGSEMTYADLSNANLSGAYFSSAQLSPADLDNATVTDTDFDNANLVGATWIDGGI
CDITSVGFCNSTAVAESDPCDSVKQDVTDDGNTVYKCLLPAVDKEVCSTEYGGVDGGTPITSCEAIDASDLVTSVNLVDI
FSQVSASFDTTLDNDTPMAILAWGGEGGIGSSGGLWTSGGDGGKSGFASTVTTLSHFLDDYGQTSFNFFIGENGTLSNID
GDGGSSTLVMIAETSPASLEDDVILIAGGGGGGDSSGWLNDGTDGGAGGVAASSIIGQGTIGVGQAIIDVADGGSTDEWG
NGGNGANDGKDGIGGQGGQGFLGANSEWVNGDPGVGSNGRGGNADDSFSASGGGGGGGGYGGGGAGDDGAGAGGGSWSVI
PSTTCNSAPTQDTAPSSPGTSGDDFGSKDGAIEVWIFPKGC
>Mature_681_residues
MQTINDYRSKFNALLALTFSLTFVTACDSNDNETQIQSGLLTEKDFANNSRLRASPEQGTVALFLEPPSATVEDDSNGET
GSDLIPYQYSRPLKHTFCYEDGNSNSNHSMVLNNSSGEEVLSITANDECVSAVIPAGEFQLVLTHGQHVDSTDTTFLVTT
PDSGSQPEANSVNYSIVSKLLSTIGNVLISPAYADTTDDNVTTLISTNACKNCDLSGADLDNATLTFADLSGADLTDAIL
TNVDLFESTLTGTNFSGADMSKGDFRGSEMTYADLSNANLSGAYFSSAQLSPADLDNATVTDTDFDNANLVGATWIDGGI
CDITSVGFCNSTAVAESDPCDSVKQDVTDDGNTVYKCLLPAVDKEVCSTEYGGVDGGTPITSCEAIDASDLVTSVNLVDI
FSQVSASFDTTLDNDTPMAILAWGGEGGIGSSGGLWTSGGDGGKSGFASTVTTLSHFLDDYGQTSFNFFIGENGTLSNID
GDGGSSTLVMIAETSPASLEDDVILIAGGGGGGDSSGWLNDGTDGGAGGVAASSIIGQGTIGVGQAIIDVADGGSTDEWG
NGGNGANDGKDGIGGQGGQGFLGANSEWVNGDPGVGSNGRGGNADDSFSASGGGGGGGGYGGGGAGDDGAGAGGGSWSVI
PSTTCNSAPTQDTAPSSPGTSGDDFGSKDGAIEVWIFPKGC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 68768; Mature: 68768

Theoretical pI: Translated: 3.50; Mature: 3.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTINDYRSKFNALLALTFSLTFVTACDSNDNETQIQSGLLTEKDFANNSRLRASPEQGT
CCCHHHHHHHHHHHHEEEEEEEEEEEECCCCCHHHHHHCCCCCHHCCCCCCEEECCCCCE
VALFLEPPSATVEDDSNGETGSDLIPYQYSRPLKHTFCYEDGNSNSNHSMVLNNSSGEEV
EEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEECCCCCCCCEEEEECCCCCEE
LSITANDECVSAVIPAGEFQLVLTHGQHVDSTDTTFLVTTPDSGSQPEANSVNYSIVSKL
EEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
LSTIGNVLISPAYADTTDDNVTTLISTNACKNCDLSGADLDNATLTFADLSGADLTDAIL
HHHHHHHEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHH
TNVDLFESTLTGTNFSGADMSKGDFRGSEMTYADLSNANLSGAYFSSAQLSPADLDNATV
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCEE
TDTDFDNANLVGATWIDGGICDITSVGFCNSTAVAESDPCDSVKQDVTDDGNTVYKCLLP
CCCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEHHHH
AVDKEVCSTEYGGVDGGTPITSCEAIDASDLVTSVNLVDIFSQVSASFDTTLDNDTPMAI
HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
LAWGGEGGIGSSGGLWTSGGDGGKSGFASTVTTLSHFLDDYGQTSFNFFIGENGTLSNID
EEECCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCC
GDGGSSTLVMIAETSPASLEDDVILIAGGGGGGDSSGWLNDGTDGGAGGVAASSIIGQGT
CCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
IGVGQAIIDVADGGSTDEWGNGGNGANDGKDGIGGQGGQGFLGANSEWVNGDPGVGSNGR
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
GGNADDSFSASGGGGGGGGYGGGGAGDDGAGAGGGSWSVIPSTTCNSAPTQDTAPSSPGT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
SGDDFGSKDGAIEVWIFPKGC
CCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MQTINDYRSKFNALLALTFSLTFVTACDSNDNETQIQSGLLTEKDFANNSRLRASPEQGT
CCCHHHHHHHHHHHHEEEEEEEEEEEECCCCCHHHHHHCCCCCHHCCCCCCEEECCCCCE
VALFLEPPSATVEDDSNGETGSDLIPYQYSRPLKHTFCYEDGNSNSNHSMVLNNSSGEEV
EEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEECCCCCCCCEEEEECCCCCEE
LSITANDECVSAVIPAGEFQLVLTHGQHVDSTDTTFLVTTPDSGSQPEANSVNYSIVSKL
EEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
LSTIGNVLISPAYADTTDDNVTTLISTNACKNCDLSGADLDNATLTFADLSGADLTDAIL
HHHHHHHEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHH
TNVDLFESTLTGTNFSGADMSKGDFRGSEMTYADLSNANLSGAYFSSAQLSPADLDNATV
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCEE
TDTDFDNANLVGATWIDGGICDITSVGFCNSTAVAESDPCDSVKQDVTDDGNTVYKCLLP
CCCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEHHHH
AVDKEVCSTEYGGVDGGTPITSCEAIDASDLVTSVNLVDIFSQVSASFDTTLDNDTPMAI
HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
LAWGGEGGIGSSGGLWTSGGDGGKSGFASTVTTLSHFLDDYGQTSFNFFIGENGTLSNID
EEECCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCC
GDGGSSTLVMIAETSPASLEDDVILIAGGGGGGDSSGWLNDGTDGGAGGVAASSIIGQGT
CCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
IGVGQAIIDVADGGSTDEWGNGGNGANDGKDGIGGQGGQGFLGANSEWVNGDPGVGSNGR
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
GGNADDSFSASGGGGGGGGYGGGGAGDDGAGAGGGSWSVIPSTTCNSAPTQDTAPSSPGT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
SGDDFGSKDGAIEVWIFPKGC
CCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA