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The map label for this gene is rarA [H]

Identifier: 157962052

GI number: 157962052

Start: 2702826

End: 2704157

Strand: Reverse

Name: rarA [H]

Synonym: Spea_2231

Alternate gene names: 157962052

Gene position: 2704157-2702826 (Counterclockwise)

Preceding gene: 157962053

Following gene: 157962051

Centisome position: 52.26

GC content: 46.77

Gene sequence:

>1332_bases
GTGTCTAGTTTCAGTTTTGATTTCGCACCGGATTTTAGGCCCTTAGCCGCTAGGATGAGGCCGGAAACATTAGAGCAATA
TATAGGTCAGACTCATCTTTTAGGTGAGGGCAAACCCCTGCGCCAAGCGCTTGAGGCAGGAAGAGCTCACTCCATGATGT
TCTGGGGCCCCCCCGGCACAGGCAAAACTACCTTAGCCGAGTTAGTGGCGCGTTATGCTAATGCCCATGTTGAACGTATT
TCTGCGGTAACATCGGGTGTAAAAGAGATCCGCAGCGCAATTGAGCATGCTAAGAACGTGGCTCAATCTCGTGGACAACG
CACCTTGCTATTTGTCGATGAGGTTCATCGTTTTAACAAGAGTCAACAAGATGCATTCTTGCCTTTCATCGAAGATGGCA
CAGTCATTTTTATTGGCGCAACCACAGAAAATCCATCATTTGAGATAAACAACGCATTATTATCCAGAGCTAGGGTTTAT
GTTATTAAACAGCTTGAAGCGGATGAAATTGGGCAGATAGTCCAACAAGCGCTAAAAGATGAAGAGCGTGGCTTAGGTAA
GCGTAAATTTCTGCTGCCACCCGATGTAGCCTTAAAGCTTGCTCAAACTTGTGACGGTGATGCGCGTAAGGCGTTAAACC
TTATCGAGCTAATGAGCGATATGCTTAAAGATGGTGAGGCCTTCACTGAAGAGATGATAGTGCAGGTAGCCGGGCAGCAA
CTTGCTGGCTTTGATAAGAATGGCGATCAGTATTACGACTTGATTTCTGCCGTTCATAAGTCGATTCGTGGTTCTGCTCC
TGATGCGGCACTATATTGGTATTGTCGAATGCTTGAGGGCGGTTGTGACCCGCTTTATATCGGTCGGCGTCTTTTAGCCA
TCGCCTCAGAGGATATAGGTAATGCCGATCCAATGGCGATGACCGTCGCCGTTAATGCATGGGAATGCTTTCATCGGGTG
GGGCCTTCGGAAGGTGAGCGTGCCATAGCACAAGCTGTGTTGTACTTAGCGAGTGCACCTAAGAGTAATGCGGTATATAC
CGCTTTTGCGAAGGCAAGACAGCTTGCCCGAGAAACGGGACACGAACCTGTACCTAAGCATCTTTGTAATGCACCGACTC
AATTGATGCAAGAGATAGGCAAAGGCGAAGGCTATCGTTATGCTCATGACGAACCTAATGCCTATGCAAGTGGCGAGAAA
TATTTGCCTCCATCTTTAACCGAACAGCAATTTTACTATCCAACAGAGCGTGGTTTTGAAAAGCGTATTAAAGATAAACT
GGCTCAGTTGAAGCTTCTTGACGAACAAAGTGAGGAGAAAAGATATGAATAA

Upstream 100 bases:

>100_bases
TCCTATTGCAGAGAATGACAAAGATCTGTTTAAGTTTATCGTACCTGATGATGTCGATATCGATGATCAGCGTTTAAAAT
CGCAAAATTAAGAGAAGTCA

Downstream 100 bases:

>100_bases
TGTACTTTTTGTGGCCTTAGGTGGCTCAATTGGTGCGGTTTTACGCTATCTTATCTCATTATTGATGCTTCAGGTATTTG
GTAGTGGATTTCCTTTTGGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MSSFSFDFAPDFRPLAARMRPETLEQYIGQTHLLGEGKPLRQALEAGRAHSMMFWGPPGTGKTTLAELVARYANAHVERI
SAVTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVY
VIKQLEADEIGQIVQQALKDEERGLGKRKFLLPPDVALKLAQTCDGDARKALNLIELMSDMLKDGEAFTEEMIVQVAGQQ
LAGFDKNGDQYYDLISAVHKSIRGSAPDAALYWYCRMLEGGCDPLYIGRRLLAIASEDIGNADPMAMTVAVNAWECFHRV
GPSEGERAIAQAVLYLASAPKSNAVYTAFAKARQLARETGHEPVPKHLCNAPTQLMQEIGKGEGYRYAHDEPNAYASGEK
YLPPSLTEQQFYYPTERGFEKRIKDKLAQLKLLDEQSEEKRYE

Sequences:

>Translated_443_residues
MSSFSFDFAPDFRPLAARMRPETLEQYIGQTHLLGEGKPLRQALEAGRAHSMMFWGPPGTGKTTLAELVARYANAHVERI
SAVTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVY
VIKQLEADEIGQIVQQALKDEERGLGKRKFLLPPDVALKLAQTCDGDARKALNLIELMSDMLKDGEAFTEEMIVQVAGQQ
LAGFDKNGDQYYDLISAVHKSIRGSAPDAALYWYCRMLEGGCDPLYIGRRLLAIASEDIGNADPMAMTVAVNAWECFHRV
GPSEGERAIAQAVLYLASAPKSNAVYTAFAKARQLARETGHEPVPKHLCNAPTQLMQEIGKGEGYRYAHDEPNAYASGEK
YLPPSLTEQQFYYPTERGFEKRIKDKLAQLKLLDEQSEEKRYE
>Mature_442_residues
SSFSFDFAPDFRPLAARMRPETLEQYIGQTHLLGEGKPLRQALEAGRAHSMMFWGPPGTGKTTLAELVARYANAHVERIS
AVTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYV
IKQLEADEIGQIVQQALKDEERGLGKRKFLLPPDVALKLAQTCDGDARKALNLIELMSDMLKDGEAFTEEMIVQVAGQQL
AGFDKNGDQYYDLISAVHKSIRGSAPDAALYWYCRMLEGGCDPLYIGRRLLAIASEDIGNADPMAMTVAVNAWECFHRVG
PSEGERAIAQAVLYLASAPKSNAVYTAFAKARQLARETGHEPVPKHLCNAPTQLMQEIGKGEGYRYAHDEPNAYASGEKY
LPPSLTEQQFYYPTERGFEKRIKDKLAQLKLLDEQSEEKRYE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=442, Percent_Identity=40.7239819004525, Blast_Score=310, Evalue=2e-84,
Organism=Homo sapiens, GI18426904, Length=442, Percent_Identity=36.8778280542986, Blast_Score=258, Evalue=1e-68,
Organism=Escherichia coli, GI1787119, Length=447, Percent_Identity=62.4161073825503, Blast_Score=579, Evalue=1e-166,
Organism=Saccharomyces cerevisiae, GI6324111, Length=436, Percent_Identity=37.6146788990826, Blast_Score=288, Evalue=1e-78,
Organism=Saccharomyces cerevisiae, GI6324039, Length=248, Percent_Identity=25.4032258064516, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49382; Mature: 49250

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSFSFDFAPDFRPLAARMRPETLEQYIGQTHLLGEGKPLRQALEAGRAHSMMFWGPPGT
CCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCEECCCCHHHHHHHHCCCCCCEEEECCCCC
GKTTLAELVARYANAHVERISAVTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCC
SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYVIKQLEADEIGQIVQQALKD
CCCCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
EERGLGKRKFLLPPDVALKLAQTCDGDARKALNLIELMSDMLKDGEAFTEEMIVQVAGQQ
HHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LAGFDKNGDQYYDLISAVHKSIRGSAPDAALYWYCRMLEGGCDPLYIGRRLLAIASEDIG
HCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
NADPMAMTVAVNAWECFHRVGPSEGERAIAQAVLYLASAPKSNAVYTAFAKARQLARETG
CCCCEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
HEPVPKHLCNAPTQLMQEIGKGEGYRYAHDEPNAYASGEKYLPPSLTEQQFYYPTERGFE
CCCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
KRIKDKLAQLKLLDEQSEEKRYE
HHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSFSFDFAPDFRPLAARMRPETLEQYIGQTHLLGEGKPLRQALEAGRAHSMMFWGPPGT
CCCCCCCCCCHHHHHHHCCHHHHHHHCCCCEECCCCHHHHHHHHCCCCCCEEEECCCCC
GKTTLAELVARYANAHVERISAVTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCC
SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYVIKQLEADEIGQIVQQALKD
CCCCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
EERGLGKRKFLLPPDVALKLAQTCDGDARKALNLIELMSDMLKDGEAFTEEMIVQVAGQQ
HHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LAGFDKNGDQYYDLISAVHKSIRGSAPDAALYWYCRMLEGGCDPLYIGRRLLAIASEDIG
HCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
NADPMAMTVAVNAWECFHRVGPSEGERAIAQAVLYLASAPKSNAVYTAFAKARQLARETG
CCCCEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
HEPVPKHLCNAPTQLMQEIGKGEGYRYAHDEPNAYASGEKYLPPSLTEQQFYYPTERGFE
CCCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
KRIKDKLAQLKLLDEQSEEKRYE
HHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]