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The map label for this gene is ydhB [H]

Identifier: 157961933

GI number: 157961933

Start: 2555664

End: 2556566

Strand: Reverse

Name: ydhB [H]

Synonym: Spea_2112

Alternate gene names: 157961933

Gene position: 2556566-2555664 (Counterclockwise)

Preceding gene: 157961935

Following gene: 157961932

Centisome position: 49.41

GC content: 45.18

Gene sequence:

>903_bases
ATGCTTTCTGAACAGTCTCTTCAGCTCATCGATATGGTTGCTCGCGTTGGCAGTTTTACCGCCGCAGCCAATAAATTACA
TAAAGTCCCTTCAGCTGTGAGTTATGCAGTTAAACAAATTGAAGAAGAACTCGGCGTGGTACTTTTTGTTCGTCATCACA
GGAGCGTTAGCTTAACTGCCGCCGGTGAACACTTCGTTAAACAGTCACGTTCACTATTATCAGACATTGACACAATGCGC
GCCGATACCATACGCGTAGCCAATGGCTGGCAGCCTACCTTGTCTATAGCGCTCGATAACATCGTACGCGCAGATAAAAT
CAGTAATTTAATCGCCGACTTTTATCGAACCTTTGATAATGTCGAACTGATTATACGCATCGAAGTATTCAATGGTGTGT
GGGAATCGATTGCTACCGGTCGTAGCGACATCGCAATAGGCGCAACCACCGCCATACCTGTTGGTGGTGATTACCATTTT
AGAGACATGGGCGAAATCGAGTGGTGCTTTCTTGTCGGTAAAAACCACCCACTTGCAGAAATTGATCGGCCGCTAACAGA
TGATGAGTTAAGGCAATACCCTTCTATATGTTTAGAAGATACTTCTCGTGAGATCCCTAAACGTATGACCTGGCTGCTAG
AAAATCAACGTCGATTAGTTGTGCCTGACTGGATCCGCGCTATCAACTGTTTTCGTGAAGGCTTAGGTGTTGGATATATG
CCGGCCCATTTTGCTTTCCCGTTTATTAAGACCGGCGCATTAATAGAAAAGCAGCTTGAAAGACCGAATAAAACCAGTCC
TTGCTGTTTAGCCTGGAACGCGACGAATAAGTCCCCAGCCATGGCTTGGGTACTCGATTATTTGGGCGATAGTGAAAAGC
TACATAAAGACTGGTTAGATTAA

Upstream 100 bases:

>100_bases
GGATTTATTAAAGTCGCGCAGTGTAAACACTTGCTAATGTGCTGTGAAACGTTTATTTTTCACATTAGCTATCAAAAAAA
ATCACAGCAGGATGTGAACC

Downstream 100 bases:

>100_bases
CTAAGCTTAACTTCAGCCTATTTTATCAATCAAGCGCTTTATACCTTGGTTTGGCTGCTGTATGATTCAATAAGTTAACA
AGCGATAATGACTCATTTAA

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MLSEQSLQLIDMVARVGSFTAAANKLHKVPSAVSYAVKQIEEELGVVLFVRHHRSVSLTAAGEHFVKQSRSLLSDIDTMR
ADTIRVANGWQPTLSIALDNIVRADKISNLIADFYRTFDNVELIIRIEVFNGVWESIATGRSDIAIGATTAIPVGGDYHF
RDMGEIEWCFLVGKNHPLAEIDRPLTDDELRQYPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGVGYM
PAHFAFPFIKTGALIEKQLERPNKTSPCCLAWNATNKSPAMAWVLDYLGDSEKLHKDWLD

Sequences:

>Translated_300_residues
MLSEQSLQLIDMVARVGSFTAAANKLHKVPSAVSYAVKQIEEELGVVLFVRHHRSVSLTAAGEHFVKQSRSLLSDIDTMR
ADTIRVANGWQPTLSIALDNIVRADKISNLIADFYRTFDNVELIIRIEVFNGVWESIATGRSDIAIGATTAIPVGGDYHF
RDMGEIEWCFLVGKNHPLAEIDRPLTDDELRQYPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGVGYM
PAHFAFPFIKTGALIEKQLERPNKTSPCCLAWNATNKSPAMAWVLDYLGDSEKLHKDWLD
>Mature_300_residues
MLSEQSLQLIDMVARVGSFTAAANKLHKVPSAVSYAVKQIEEELGVVLFVRHHRSVSLTAAGEHFVKQSRSLLSDIDTMR
ADTIRVANGWQPTLSIALDNIVRADKISNLIADFYRTFDNVELIIRIEVFNGVWESIATGRSDIAIGATTAIPVGGDYHF
RDMGEIEWCFLVGKNHPLAEIDRPLTDDELRQYPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGVGYM
PAHFAFPFIKTGALIEKQLERPNKTSPCCLAWNATNKSPAMAWVLDYLGDSEKLHKDWLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=299, Percent_Identity=53.8461538461538, Blast_Score=348, Evalue=2e-97,
Organism=Escherichia coli, GI1786508, Length=285, Percent_Identity=30.8771929824561, Blast_Score=178, Evalue=3e-46,
Organism=Escherichia coli, GI1786713, Length=273, Percent_Identity=31.8681318681319, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI87082024, Length=277, Percent_Identity=30.3249097472924, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1789492, Length=294, Percent_Identity=32.312925170068, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787806, Length=142, Percent_Identity=28.8732394366197, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI157672245, Length=174, Percent_Identity=28.735632183908, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1789506, Length=172, Percent_Identity=26.1627906976744, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1788706, Length=120, Percent_Identity=32.5, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33884; Mature: 33884

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSEQSLQLIDMVARVGSFTAAANKLHKVPSAVSYAVKQIEEELGVVLFVRHHRSVSLTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEE
AGEHFVKQSRSLLSDIDTMRADTIRVANGWQPTLSIALDNIVRADKISNLIADFYRTFDN
HHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VELIIRIEVFNGVWESIATGRSDIAIGATTAIPVGGDYHFRDMGEIEWCFLVGKNHPLAE
EEEEEEEEEHHHHHHHHHCCCCCEEEECCEEEECCCCCCCCCCCCEEEEEEECCCCCHHH
IDRPLTDDELRQYPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGVGYM
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCC
PAHFAFPFIKTGALIEKQLERPNKTSPCCLAWNATNKSPAMAWVLDYLGDSEKLHKDWLD
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCHHHHHHHCCC
>Mature Secondary Structure
MLSEQSLQLIDMVARVGSFTAAANKLHKVPSAVSYAVKQIEEELGVVLFVRHHRSVSLTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEE
AGEHFVKQSRSLLSDIDTMRADTIRVANGWQPTLSIALDNIVRADKISNLIADFYRTFDN
HHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VELIIRIEVFNGVWESIATGRSDIAIGATTAIPVGGDYHFRDMGEIEWCFLVGKNHPLAE
EEEEEEEEEHHHHHHHHHCCCCCEEEECCEEEECCCCCCCCCCCCEEEEEEECCCCCHHH
IDRPLTDDELRQYPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGVGYM
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCC
PAHFAFPFIKTGALIEKQLERPNKTSPCCLAWNATNKSPAMAWVLDYLGDSEKLHKDWLD
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]