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The map label for this gene is xerD [H]

Identifier: 157961915

GI number: 157961915

Start: 2535348

End: 2536550

Strand: Reverse

Name: xerD [H]

Synonym: Spea_2094

Alternate gene names: 157961915

Gene position: 2536550-2535348 (Counterclockwise)

Preceding gene: 157961917

Following gene: 157961911

Centisome position: 49.02

GC content: 41.98

Gene sequence:

>1203_bases
ATGCTGGATTTAACGTCACTTTTACAGATTAAGGCCAAAGATCTAAAGATGAATTCTGAGCAAAACTTTCCTGAAATAGA
GGGCTTTTCACAAATCGAAGACTCAGATCTGATAGAGAATGCTCCTCAAGAGGTCGCTATTGTTGATGGCGAGAGTGCTC
TGACTCGATTTAATTCTGGCTTAGCAGAGAGTCGAACTTCTCAGTTTGATCACAATGAGAAGTTCTTCAAAGAGCAGCAA
CTTCCTATCTCAATCTTAGATGATTACAAAAGTGCGGCTGGTGAAACCCAATATGAGATCTCTGCTAACACTCGCCGAGT
CTATCGTTCCAGTTTTACCATTTTCAAGAATTACTGCGATCAACATAATCTAAGTCCCCTGCCCGCAGACCCTCGCAGTG
TGATTTCTTTTATCGGTCATCAAAAAGAGCTCTACCAGGAAAAGAATGGCCACCAGCTATCAAAACAAACAATCAACACC
CGTTTGGCGGCAATCCGTTTCTTTCATATTCAAGCCGCATTGCACTCACCGACTGAACATCCACTGGTGATCCGAGTGAT
GCGCGGCCTGATGCGTAACCAATATCGACATGTTTCTGACTATGATCAGCAACCGATCACCTATGACGAACTGGAGATGT
TATTGGCCGTAATTGATCAACAACCAAAAGAGCTAACTCGTTTACGAGATAAGGCTATTTTACAGCTTGGCCTGCAAGGT
GGATTTAGACGTTCAGAATTAGCAGAAGTCAGAATTGAGCATATTAGTTTTTTAAGAGAGAAGTTAAAGGTTCGGGTACC
CTATTCAAAGAGTAACCAGCAGGGACAAAGGGAGTGGAAAGATCTCCCTAAACAAGAACTATTTTCTGCTTATGATGCCG
TTCAACAATGGCTCGACGCCACCAAGATTAAACAGGGACACCTGTTTAGATCACTTAGCCGTGATGGCAACTCAGTTAGA
GAGTATCAGATCACTCAAGAAAAAATAGGTAAGGGTTTTTTAAAGGGGGATGACATTTATCAGATGATAAAAAAATACTG
TGATAAGGCGGGACTCAATTCTCGATTCTATGGAGCCCATAGTTTACGAAGCGGTTGTGTTACCCAGCTCCATGAAAATG
ATAAAGACCATCTCTACATCATGGCAAGAACTGGGCATACAGATCCAAGATCATTGCGACACTACTTAAAACCTAAAGAT
TAA

Upstream 100 bases:

>100_bases
GGGTAAATTAATCAAAAAGTATTTAATCCCGCTCTACCAGTGATAATGACGATTATCACTGGTAGGGATAAGGGTTTTTA
AGTAGAATACCTGCCGTTAA

Downstream 100 bases:

>100_bases
TACTTGTTTTGATTGTTAGGTCGCTTCATTTTAAGTTTAAGTTTTAGTTTTATGAAAAACTAAAATGGACACGGACTATT
TGCCACTATCCTTTCCCCTG

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MLDLTSLLQIKAKDLKMNSEQNFPEIEGFSQIEDSDLIENAPQEVAIVDGESALTRFNSGLAESRTSQFDHNEKFFKEQQ
LPISILDDYKSAAGETQYEISANTRRVYRSSFTIFKNYCDQHNLSPLPADPRSVISFIGHQKELYQEKNGHQLSKQTINT
RLAAIRFFHIQAALHSPTEHPLVIRVMRGLMRNQYRHVSDYDQQPITYDELEMLLAVIDQQPKELTRLRDKAILQLGLQG
GFRRSELAEVRIEHISFLREKLKVRVPYSKSNQQGQREWKDLPKQELFSAYDAVQQWLDATKIKQGHLFRSLSRDGNSVR
EYQITQEKIGKGFLKGDDIYQMIKKYCDKAGLNSRFYGAHSLRSGCVTQLHENDKDHLYIMARTGHTDPRSLRHYLKPKD

Sequences:

>Translated_400_residues
MLDLTSLLQIKAKDLKMNSEQNFPEIEGFSQIEDSDLIENAPQEVAIVDGESALTRFNSGLAESRTSQFDHNEKFFKEQQ
LPISILDDYKSAAGETQYEISANTRRVYRSSFTIFKNYCDQHNLSPLPADPRSVISFIGHQKELYQEKNGHQLSKQTINT
RLAAIRFFHIQAALHSPTEHPLVIRVMRGLMRNQYRHVSDYDQQPITYDELEMLLAVIDQQPKELTRLRDKAILQLGLQG
GFRRSELAEVRIEHISFLREKLKVRVPYSKSNQQGQREWKDLPKQELFSAYDAVQQWLDATKIKQGHLFRSLSRDGNSVR
EYQITQEKIGKGFLKGDDIYQMIKKYCDKAGLNSRFYGAHSLRSGCVTQLHENDKDHLYIMARTGHTDPRSLRHYLKPKD
>Mature_400_residues
MLDLTSLLQIKAKDLKMNSEQNFPEIEGFSQIEDSDLIENAPQEVAIVDGESALTRFNSGLAESRTSQFDHNEKFFKEQQ
LPISILDDYKSAAGETQYEISANTRRVYRSSFTIFKNYCDQHNLSPLPADPRSVISFIGHQKELYQEKNGHQLSKQTINT
RLAAIRFFHIQAALHSPTEHPLVIRVMRGLMRNQYRHVSDYDQQPITYDELEMLLAVIDQQPKELTRLRDKAILQLGLQG
GFRRSELAEVRIEHISFLREKLKVRVPYSKSNQQGQREWKDLPKQELFSAYDAVQQWLDATKIKQGHLFRSLSRDGNSVR
EYQITQEKIGKGFLKGDDIYQMIKKYCDKAGLNSRFYGAHSLRSGCVTQLHENDKDHLYIMARTGHTDPRSLRHYLKPKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46392; Mature: 46392

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLTSLLQIKAKDLKMNSEQNFPEIEGFSQIEDSDLIENAPQEVAIVDGESALTRFNSG
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCHHHHCCCCCEEEECCHHHHHHHHCC
LAESRTSQFDHNEKFFKEQQLPISILDDYKSAAGETQYEISANTRRVYRSSFTIFKNYCD
HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHH
QHNLSPLPADPRSVISFIGHQKELYQEKNGHQLSKQTINTRLAAIRFFHIQAALHSPTEH
CCCCCCCCCCHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PLVIRVMRGLMRNQYRHVSDYDQQPITYDELEMLLAVIDQQPKELTRLRDKAILQLGLQG
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
GFRRSELAEVRIEHISFLREKLKVRVPYSKSNQQGQREWKDLPKQELFSAYDAVQQWLDA
CCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
TKIKQGHLFRSLSRDGNSVREYQITQEKIGKGFLKGDDIYQMIKKYCDKAGLNSRFYGAH
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH
SLRSGCVTQLHENDKDHLYIMARTGHTDPRSLRHYLKPKD
HHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCCC
>Mature Secondary Structure
MLDLTSLLQIKAKDLKMNSEQNFPEIEGFSQIEDSDLIENAPQEVAIVDGESALTRFNSG
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCHHHHCCCCCEEEECCHHHHHHHHCC
LAESRTSQFDHNEKFFKEQQLPISILDDYKSAAGETQYEISANTRRVYRSSFTIFKNYCD
HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHH
QHNLSPLPADPRSVISFIGHQKELYQEKNGHQLSKQTINTRLAAIRFFHIQAALHSPTEH
CCCCCCCCCCHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PLVIRVMRGLMRNQYRHVSDYDQQPITYDELEMLLAVIDQQPKELTRLRDKAILQLGLQG
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
GFRRSELAEVRIEHISFLREKLKVRVPYSKSNQQGQREWKDLPKQELFSAYDAVQQWLDA
CCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
TKIKQGHLFRSLSRDGNSVREYQITQEKIGKGFLKGDDIYQMIKKYCDKAGLNSRFYGAH
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH
SLRSGCVTQLHENDKDHLYIMARTGHTDPRSLRHYLKPKD
HHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]