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The map label for this gene is ycfD [H]

Identifier: 157961821

GI number: 157961821

Start: 2423747

End: 2424892

Strand: Direct

Name: ycfD [H]

Synonym: Spea_2000

Alternate gene names: 157961821

Gene position: 2423747-2424892 (Clockwise)

Preceding gene: 157961819

Following gene: 157961823

Centisome position: 46.84

GC content: 45.9

Gene sequence:

>1146_bases
ATGCAATTAGATATCAATGGTTTAACACCAGAGCAGTTTCTCAAAGAATACTGGCAAAAAAAACCACTAGTGATCCGTCA
AGGATTTAAAAACTTTCAAGATCTGCTCTCACCTGACGAGATGGCAGGGCTGGCTTGTGATGAAATGGTGGAGTCTCGTC
GAGTTTATCGAGAGAAGGGAGACTGGCAGGCGGAGTTTGGGCCATTTGAATCTTATGAGCATTTAGGCGAGAAGGATTGG
ACCTTAATCGTACAGGCATTAAATAATTGGGTTCCTGCAGCTGAAGACTTACTTAAATGCTTTGATTTTATACCTCGCTG
GCGTTTAGATGACGTGATGGTTAGCTACGCGGTTCCCGGTGGTGGAGTTGGGCCGCATATTGACCTTTATGACGTGTTTA
TCTGTCAAGGTTCAGGGCGTCGCCGATGGCGTGTAGGCGACTTAGGTCCTCATAAAGAGTTTGCTGCGCATCCAGCACTG
CTGCATACCGAAGCATTTGACCCGATCATAGATGTTGAACTCTTGCCTGGTGATATTCTCTATCTACCGCCAGGGTATCC
TCATGATGGCGTGACACTTGAGCCGTCAATGAGCTTTTCTGTTGGTTACCGAACAGCTTCGGCGAAGGATATGGTGAGTG
CTTTGGCCGATCACCTAATCGATAACGAACAAGGTACTAAGCAGATCACGGATCCCGATCGTGGCTTGAGCCAACATTCT
GGTTTAATCGATGAACAAGATCTAGGACGTATCAAGCAGCAACTCATCGAAACGCTAGATGATACACTGATCAGTGAATT
CAGTGGTCGCTATCTGACTCAATCTAAGTGCGAATTAGACCTACCTGAAGAGCAATTAGGCTTCCAATTAGACGATATAA
AGGCAATCATCTCAGAGCAGCCGTTAATTCGTTTGGGCGGGCTACGTTGTCTTTATTTCGCGACCAGTCTTGAGTCTGGT
GTCATGTACATTAATGGCGAGCAAGTGGAACTAGGAGAAGGCAGTTCAGAGGTGATTGAAGCGCTCTGTAATCAACAGCA
GCTAACCCTCGAAGACATGTCTACTTGGTTAGAAAATGAAGCTGTGATGACTCAATTGACCGACTGGGTTAATGCGGGTT
ATTGGTACTTCGATGATGTAGAGTAA

Upstream 100 bases:

>100_bases
AATTCATAGCTGCACAGAATAAGCATGTTTCATGATCTCACCGTGATTTTTTTCAGCGAATATTTGTTAAGATCTGCGCA
AATTTACGTGAGTTAATAAC

Downstream 100 bases:

>100_bases
ATTACTTCAAAAGTAATAGAAGACTGACCATAGGTTTTGCTAGTTAGTTACTATTATAATTGAAGATTAAAGCTCAATAG
TCTTAAAGCTATTGAGCTTT

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MQLDINGLTPEQFLKEYWQKKPLVIRQGFKNFQDLLSPDEMAGLACDEMVESRRVYREKGDWQAEFGPFESYEHLGEKDW
TLIVQALNNWVPAAEDLLKCFDFIPRWRLDDVMVSYAVPGGGVGPHIDLYDVFICQGSGRRRWRVGDLGPHKEFAAHPAL
LHTEAFDPIIDVELLPGDILYLPPGYPHDGVTLEPSMSFSVGYRTASAKDMVSALADHLIDNEQGTKQITDPDRGLSQHS
GLIDEQDLGRIKQQLIETLDDTLISEFSGRYLTQSKCELDLPEEQLGFQLDDIKAIISEQPLIRLGGLRCLYFATSLESG
VMYINGEQVELGEGSSEVIEALCNQQQLTLEDMSTWLENEAVMTQLTDWVNAGYWYFDDVE

Sequences:

>Translated_381_residues
MQLDINGLTPEQFLKEYWQKKPLVIRQGFKNFQDLLSPDEMAGLACDEMVESRRVYREKGDWQAEFGPFESYEHLGEKDW
TLIVQALNNWVPAAEDLLKCFDFIPRWRLDDVMVSYAVPGGGVGPHIDLYDVFICQGSGRRRWRVGDLGPHKEFAAHPAL
LHTEAFDPIIDVELLPGDILYLPPGYPHDGVTLEPSMSFSVGYRTASAKDMVSALADHLIDNEQGTKQITDPDRGLSQHS
GLIDEQDLGRIKQQLIETLDDTLISEFSGRYLTQSKCELDLPEEQLGFQLDDIKAIISEQPLIRLGGLRCLYFATSLESG
VMYINGEQVELGEGSSEVIEALCNQQQLTLEDMSTWLENEAVMTQLTDWVNAGYWYFDDVE
>Mature_381_residues
MQLDINGLTPEQFLKEYWQKKPLVIRQGFKNFQDLLSPDEMAGLACDEMVESRRVYREKGDWQAEFGPFESYEHLGEKDW
TLIVQALNNWVPAAEDLLKCFDFIPRWRLDDVMVSYAVPGGGVGPHIDLYDVFICQGSGRRRWRVGDLGPHKEFAAHPAL
LHTEAFDPIIDVELLPGDILYLPPGYPHDGVTLEPSMSFSVGYRTASAKDMVSALADHLIDNEQGTKQITDPDRGLSQHS
GLIDEQDLGRIKQQLIETLDDTLISEFSGRYLTQSKCELDLPEEQLGFQLDDIKAIISEQPLIRLGGLRCLYFATSLESG
VMYINGEQVELGEGSSEVIEALCNQQQLTLEDMSTWLENEAVMTQLTDWVNAGYWYFDDVE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=368, Percent_Identity=42.1195652173913, Blast_Score=322, Evalue=2e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 43162; Mature: 43162

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLDINGLTPEQFLKEYWQKKPLVIRQGFKNFQDLLSPDEMAGLACDEMVESRRVYREKG
CEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHHHCC
DWQAEFGPFESYEHLGEKDWTLIVQALNNWVPAAEDLLKCFDFIPRWRLDDVMVSYAVPG
CCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHEEECCC
GGVGPHIDLYDVFICQGSGRRRWRVGDLGPHKEFAAHPALLHTEAFDPIIDVELLPGDIL
CCCCCCCEEEEEEEEECCCCCEEECCCCCCCHHHHCCCHHEEHHCCCCEEEEEECCCCEE
YLPPGYPHDGVTLEPSMSFSVGYRTASAKDMVSALADHLIDNEQGTKQITDPDRGLSQHS
ECCCCCCCCCEEECCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC
GLIDEQDLGRIKQQLIETLDDTLISEFSGRYLTQSKCELDLPEEQLGFQLDDIKAIISEQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHCCC
PLIRLGGLRCLYFATSLESGVMYINGEQVELGEGSSEVIEALCNQQQLTLEDMSTWLENE
CCHHHCCEEEEHHHHHHCCCEEEECCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHH
AVMTQLTDWVNAGYWYFDDVE
HHHHHHHHHHHCCCEEECCCC
>Mature Secondary Structure
MQLDINGLTPEQFLKEYWQKKPLVIRQGFKNFQDLLSPDEMAGLACDEMVESRRVYREKG
CEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHHHCC
DWQAEFGPFESYEHLGEKDWTLIVQALNNWVPAAEDLLKCFDFIPRWRLDDVMVSYAVPG
CCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHEEECCC
GGVGPHIDLYDVFICQGSGRRRWRVGDLGPHKEFAAHPALLHTEAFDPIIDVELLPGDIL
CCCCCCCEEEEEEEEECCCCCEEECCCCCCCHHHHCCCHHEEHHCCCCEEEEEECCCCEE
YLPPGYPHDGVTLEPSMSFSVGYRTASAKDMVSALADHLIDNEQGTKQITDPDRGLSQHS
ECCCCCCCCCEEECCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC
GLIDEQDLGRIKQQLIETLDDTLISEFSGRYLTQSKCELDLPEEQLGFQLDDIKAIISEQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHCCC
PLIRLGGLRCLYFATSLESGVMYINGEQVELGEGSSEVIEALCNQQQLTLEDMSTWLENE
CCHHHCCEEEEHHHHHHCCCEEEECCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHH
AVMTQLTDWVNAGYWYFDDVE
HHHHHHHHHHHCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]