| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is pabC [H]
Identifier: 157961744
GI number: 157961744
Start: 2332117
End: 2333019
Strand: Direct
Name: pabC [H]
Synonym: Spea_1921
Alternate gene names: 157961744
Gene position: 2332117-2333019 (Clockwise)
Preceding gene: 157961743
Following gene: 157961745
Centisome position: 45.07
GC content: 44.96
Gene sequence:
>903_bases ATGACACAGGTTTGGGTAGATGGACAGCCCGATAGTCATGTTAATCCCCTTGACCGGGGGTTAGCTTATGGTGACGGTTT ATTCGCAACCATGCGAGTACATCAGGGAAAAATACAATTCTTAGCATCACATCTTGAGCGACTGACACAAGGCGCATATC GACTTGGGTTTTGCTGGCATCCATCTGACAAACTTCAGCTGCAACTACGCACATTAGCCGAAGATAACCCTAATTCTTGC ATCAAAATATTACTGACGCGTGGAGTAGGCGGGCGAGGCTACGCTGCTACTGTTGTTAGACATAACCCTGCAGTAATCCT TGAAGCTGGCAATGTACAGCAAAGCCAAGCAATAACAGCGCCGAGCTCGCAAGTCGCTGCAGCATTAAATACCACAGAGA TTGTGTCGCTGCATAGTTTACCGATCCATTATCAAAATTGGCAGCAGCAGGGGGTAAGCCTAGCCCTTTCTGAAGTCAGA TTAGGTAGGCAAGCTAAGCTTGCTGGTATCAAGCATTGTAATCGCTTAGAGCAGGTAATCATTAAGTCTGTAGACTTGCC TGAGGATATCCAAGACTGGCTGGTCTTGGACTCTGATGACAATATCGTTGGATCCTCGATGGCTAATATTTTCTTTGTCT TAGACAAAACAATTATTACACCTCGGCAGAGTTTCGCCGGGGTAGCAGGTATGATGCGCGAACAAGTTATCAATCAATTA TTACAGATGGAGTATCAAGTCGAGGTCACCGACTTCCATCACAGTATGTTAAGTACCGCAAAGCATGTATTTATGACCAA TAGCCTATTTGGGCTTGTCGATGTGTTGGCTATCGCAGATATGCGTTTTAGCCGTGCATCTTTGACTTTAAAGATAAGAG AACAACTCAGTCTGACATTATGA
Upstream 100 bases:
>100_bases TTCGTGTCTTTAAAGATCATACCGCCCCTTATATTGATTTAATCGGCATTAGTACGGCAGGACTCGAAACTGTCGTTAGC CGTATTAGCCAGGATAGCTA
Downstream 100 bases:
>100_bases AAAAAGCAATAATAGGTCTTCTCGCAACATTTTTTACGCTATTAACTTTGGGCGCTATAGGCGCATATTGGGGATATAAC ACGCTGCAAGCCTATGGTGA
Product: aminodeoxychorismate lyase
Products: NA
Alternate protein names: 4-amino-4-deoxychorismate lyase; ADC lyase; ADCL [H]
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MTQVWVDGQPDSHVNPLDRGLAYGDGLFATMRVHQGKIQFLASHLERLTQGAYRLGFCWHPSDKLQLQLRTLAEDNPNSC IKILLTRGVGGRGYAATVVRHNPAVILEAGNVQQSQAITAPSSQVAAALNTTEIVSLHSLPIHYQNWQQQGVSLALSEVR LGRQAKLAGIKHCNRLEQVIIKSVDLPEDIQDWLVLDSDDNIVGSSMANIFFVLDKTIITPRQSFAGVAGMMREQVINQL LQMEYQVEVTDFHHSMLSTAKHVFMTNSLFGLVDVLAIADMRFSRASLTLKIREQLSLTL
Sequences:
>Translated_300_residues MTQVWVDGQPDSHVNPLDRGLAYGDGLFATMRVHQGKIQFLASHLERLTQGAYRLGFCWHPSDKLQLQLRTLAEDNPNSC IKILLTRGVGGRGYAATVVRHNPAVILEAGNVQQSQAITAPSSQVAAALNTTEIVSLHSLPIHYQNWQQQGVSLALSEVR LGRQAKLAGIKHCNRLEQVIIKSVDLPEDIQDWLVLDSDDNIVGSSMANIFFVLDKTIITPRQSFAGVAGMMREQVINQL LQMEYQVEVTDFHHSMLSTAKHVFMTNSLFGLVDVLAIADMRFSRASLTLKIREQLSLTL >Mature_299_residues TQVWVDGQPDSHVNPLDRGLAYGDGLFATMRVHQGKIQFLASHLERLTQGAYRLGFCWHPSDKLQLQLRTLAEDNPNSCI KILLTRGVGGRGYAATVVRHNPAVILEAGNVQQSQAITAPSSQVAAALNTTEIVSLHSLPIHYQNWQQQGVSLALSEVRL GRQAKLAGIKHCNRLEQVIIKSVDLPEDIQDWLVLDSDDNIVGSSMANIFFVLDKTIITPRQSFAGVAGMMREQVINQLL QMEYQVEVTDFHHSMLSTAKHVFMTNSLFGLVDVLAIADMRFSRASLTLKIREQLSLTL
Specific function: Converts 4-amino-4-deoxychorismate into 4-aminobenzoate (PABA) and pyruvate [H]
COG id: COG0115
COG function: function code EH; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Escherichia coli, GI1787338, Length=284, Percent_Identity=34.8591549295775, Blast_Score=156, Evalue=1e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017824 - InterPro: IPR001544 - InterPro: IPR018300 [H]
Pfam domain/function: PF01063 Aminotran_4 [H]
EC number: =4.1.3.38 [H]
Molecular weight: Translated: 33308; Mature: 33177
Theoretical pI: Translated: 7.12; Mature: 7.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQVWVDGQPDSHVNPLDRGLAYGDGLFATMRVHQGKIQFLASHLERLTQGAYRLGFCWH CCEEEECCCCCCCCCHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEC PSDKLQLQLRTLAEDNPNSCIKILLTRGVGGRGYAATVVRHNPAVILEAGNVQQSQAITA CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEECCCCCCCCEECC PSSQVAAALNTTEIVSLHSLPIHYQNWQQQGVSLALSEVRLGRQAKLAGIKHCNRLEQVI CCHHHHHHCCHHHEEEEECCCCEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH IKSVDLPEDIQDWLVLDSDDNIVGSSMANIFFVLDKTIITPRQSFAGVAGMMREQVINQL HHHCCCCCCHHHCEEECCCCCCCHHHHHHEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHH LQMEYQVEVTDFHHSMLSTAKHVFMTNSLFGLVDVLAIADMRFSRASLTLKIREQLSLTL HHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHCCCC >Mature Secondary Structure TQVWVDGQPDSHVNPLDRGLAYGDGLFATMRVHQGKIQFLASHLERLTQGAYRLGFCWH CEEEECCCCCCCCCHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEC PSDKLQLQLRTLAEDNPNSCIKILLTRGVGGRGYAATVVRHNPAVILEAGNVQQSQAITA CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEECCCCCCCCEECC PSSQVAAALNTTEIVSLHSLPIHYQNWQQQGVSLALSEVRLGRQAKLAGIKHCNRLEQVI CCHHHHHHCCHHHEEEEECCCCEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH IKSVDLPEDIQDWLVLDSDDNIVGSSMANIFFVLDKTIITPRQSFAGVAGMMREQVINQL HHHCCCCCCHHHCEEECCCCCCCHHHHHHEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHH LQMEYQVEVTDFHHSMLSTAKHVFMTNSLFGLVDVLAIADMRFSRASLTLKIREQLSLTL HHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1644759; 8905232; 9278503; 2071583; 2251281; 10876155 [H]