| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is metG [H]
Identifier: 157961740
GI number: 157961740
Start: 2327899
End: 2329938
Strand: Reverse
Name: metG [H]
Synonym: Spea_1917
Alternate gene names: 157961740
Gene position: 2329938-2327899 (Counterclockwise)
Preceding gene: 157961750
Following gene: 157961736
Centisome position: 45.03
GC content: 45.2
Gene sequence:
>2040_bases ATGGCAAATTCACAACGTAAAATCCTAGTCACAAGTGCACTTCCGTACGCTAACGGTCCAATCCATTTGGGTCATATGCT TGAGTATATTCAAACTGATATTTGGTCACGTTTCCAAAAACTACGTGGGCATGAATGTCACTATATCTGCGCTGACGATG CTCACGGCACGCCAATCATGCTTAAAGCACAGCAGCTGGGTATGACTCCTGAAGATATGATCGCTCAAGTTCAAAAAGAA CATGAGAAGGATTTTGCTGACTTCAATATCCAGTTTGATAATTTCCACAGCACTCACAGTGATGAAAACCGTGAGCTAGC GAGCGAGATCTATATCAAGCTACGCGATGCTGGCTATATCAAGACCAAGACGATTTCTCAGCTATTCGACCCAGAAAAGT CGATGTTCCTTCCTGACCGTTTTGTTAAGGGCACTTGCCCACGTTGTAAGTCTGAAGATCAATATGGTGATAACTGCGAC AACTGCGGTGCAACCTACAGCACGACCGATCTGATTGATCCAAAATCAGCGGTATCTGGCGCAACACCGGTAATGAAAGA TACAGAGCATTTCTTCTTTGACCTTCCTTCTTTCGAAGGCATGCTTAAAGAGTGGATTAACTCAGGTTCTTTGCAGCAAG AAATGGCTAACAAGCTAGGCGAGTGGTTCGAGCAAGGCCTACAGCAGTGGGATATCTCACGCGATGCGCCATACTTTGGT TTTGAGATCCCAGATGCACCAGGTAAGTTCTTCTACGTTTGGTTAGACGCGCCTATCGGCTACATGGGCTCATTTAAGAA CCTATGTAACAAGCGTGACGATCTAAACTTTGATGATTTCTGGAGCAAAGATTCAACTGCCGAAGTTTATCACTTCATCG GTAAAGATATCGTTTACTTCCACAGTCTATTCTGGCCAGCAATGCTTGAAGGCGCTGGCTTACGTAAGCCAACCAGTGTT TATGCACACGGTTATGTCACGGTTAACGGCGCTAAGATGTCAAAGTCTAAAGGCACCTTTATTAAGGCTCGTACATACCT TGATAACCTAGATCCTGAATACCTACGTTATTACTACGCTGCCAAGCTGAGTAGCAGAATTGATGACCTTGACTTAAACC TTGAAGACTTCGCTCAGCGTGTAAACTCTGATCTTGTTGGTAAGTTAGTCAACCTAGCCTCACGTACAGCTGGCTTTATC AGCAAACGTTTTGATGGCAAGTTAGCAAAAATCGCAGACACTAGCCTGACAGAAAGCTTCTTAGCTAAACAAGAAACTAT TGCTAACTTCTACGAGACTCGTGAATTCGGCAAAGCAATGCGTGAAGTGATGACACTTGCAGACATCGCTAACGCCTATG TTGCAGACTCGGCACCTTGGCAGTTAATTAAAGATGACGCTAAGCAAGAAGAAGCGCACCAAGTATGCACTAATGCACTT AACCTGTTCCGCATCTTGGTGACCTATCTTAAGCCAGTACTACCTAAGCTTGCACAAGATGTTGAAGCCTTCCTACAGAT GGAACTAACCTGGGACAACCTAGACGTTGATCTAGCAGGCCATGAAATCGCTAAATTCAAGGCGTTAATGCAGCGTGTTG AAATGAAGAGCATCGAAGCCATTATTGAAGCCTCTAAAGAGAACCTTCAAGTGACTGCTGAGCCTGAAGTTAAAAAGCAA GATAAGACACCGCTTGAGCAAGACCCGATTAGCGAGGAGATCAGTTTCGAAGATTTCGCTAAGATCGATCTGCGCATCGC ACGTATCGCCAAGGCTGAACACGTTAAAGAAGCCAATAAACTTCTACGTCTTGAGCTTGATTTAGGCGGCGAAACCAAGC AAGTGTTTGCAGGTATTAAGTCGGCCTATGCTCCTGAAGATCTCGAAGGTAAACTTACTGTTATGGTAGCAAACCTAGCA CCGCGCCAGATGCGCTTCGGTGTATCAGAAGGCATGGTATTGGCCGCAGGCCCTGGTGGAAAAGATCTGTGGATCATGGA GCCACACGAAGGTGCCCAGCCTGGTATGAAAGTAAAATAA
Upstream 100 bases:
>100_bases CTAGATTTAATCCACTTGGGCGAGCTTTTGATGAAACTATGCATTGGATCGGTTAGTATCTATGCCATTCCAATTAGGTT CCCAGCGATTTTGAGAAAAG
Downstream 100 bases:
>100_bases ACTTTTTTATTTATACTGATTGGTATTAAACGCTCTGTCCCGTCCTGAAATAGGTTGACGGTTTTTACTAGACCAGTAGC TTCTGCTGCTGGTCTTTTTT
Product: methionyl-tRNA synthetase
Products: NA
Alternate protein names: Methionine--tRNA ligase; MetRS [H]
Number of amino acids: Translated: 679; Mature: 678
Protein sequence:
>679_residues MANSQRKILVTSALPYANGPIHLGHMLEYIQTDIWSRFQKLRGHECHYICADDAHGTPIMLKAQQLGMTPEDMIAQVQKE HEKDFADFNIQFDNFHSTHSDENRELASEIYIKLRDAGYIKTKTISQLFDPEKSMFLPDRFVKGTCPRCKSEDQYGDNCD NCGATYSTTDLIDPKSAVSGATPVMKDTEHFFFDLPSFEGMLKEWINSGSLQQEMANKLGEWFEQGLQQWDISRDAPYFG FEIPDAPGKFFYVWLDAPIGYMGSFKNLCNKRDDLNFDDFWSKDSTAEVYHFIGKDIVYFHSLFWPAMLEGAGLRKPTSV YAHGYVTVNGAKMSKSKGTFIKARTYLDNLDPEYLRYYYAAKLSSRIDDLDLNLEDFAQRVNSDLVGKLVNLASRTAGFI SKRFDGKLAKIADTSLTESFLAKQETIANFYETREFGKAMREVMTLADIANAYVADSAPWQLIKDDAKQEEAHQVCTNAL NLFRILVTYLKPVLPKLAQDVEAFLQMELTWDNLDVDLAGHEIAKFKALMQRVEMKSIEAIIEASKENLQVTAEPEVKKQ DKTPLEQDPISEEISFEDFAKIDLRIARIAKAEHVKEANKLLRLELDLGGETKQVFAGIKSAYAPEDLEGKLTVMVANLA PRQMRFGVSEGMVLAAGPGGKDLWIMEPHEGAQPGMKVK
Sequences:
>Translated_679_residues MANSQRKILVTSALPYANGPIHLGHMLEYIQTDIWSRFQKLRGHECHYICADDAHGTPIMLKAQQLGMTPEDMIAQVQKE HEKDFADFNIQFDNFHSTHSDENRELASEIYIKLRDAGYIKTKTISQLFDPEKSMFLPDRFVKGTCPRCKSEDQYGDNCD NCGATYSTTDLIDPKSAVSGATPVMKDTEHFFFDLPSFEGMLKEWINSGSLQQEMANKLGEWFEQGLQQWDISRDAPYFG FEIPDAPGKFFYVWLDAPIGYMGSFKNLCNKRDDLNFDDFWSKDSTAEVYHFIGKDIVYFHSLFWPAMLEGAGLRKPTSV YAHGYVTVNGAKMSKSKGTFIKARTYLDNLDPEYLRYYYAAKLSSRIDDLDLNLEDFAQRVNSDLVGKLVNLASRTAGFI SKRFDGKLAKIADTSLTESFLAKQETIANFYETREFGKAMREVMTLADIANAYVADSAPWQLIKDDAKQEEAHQVCTNAL NLFRILVTYLKPVLPKLAQDVEAFLQMELTWDNLDVDLAGHEIAKFKALMQRVEMKSIEAIIEASKENLQVTAEPEVKKQ DKTPLEQDPISEEISFEDFAKIDLRIARIAKAEHVKEANKLLRLELDLGGETKQVFAGIKSAYAPEDLEGKLTVMVANLA PRQMRFGVSEGMVLAAGPGGKDLWIMEPHEGAQPGMKVK >Mature_678_residues ANSQRKILVTSALPYANGPIHLGHMLEYIQTDIWSRFQKLRGHECHYICADDAHGTPIMLKAQQLGMTPEDMIAQVQKEH EKDFADFNIQFDNFHSTHSDENRELASEIYIKLRDAGYIKTKTISQLFDPEKSMFLPDRFVKGTCPRCKSEDQYGDNCDN CGATYSTTDLIDPKSAVSGATPVMKDTEHFFFDLPSFEGMLKEWINSGSLQQEMANKLGEWFEQGLQQWDISRDAPYFGF EIPDAPGKFFYVWLDAPIGYMGSFKNLCNKRDDLNFDDFWSKDSTAEVYHFIGKDIVYFHSLFWPAMLEGAGLRKPTSVY AHGYVTVNGAKMSKSKGTFIKARTYLDNLDPEYLRYYYAAKLSSRIDDLDLNLEDFAQRVNSDLVGKLVNLASRTAGFIS KRFDGKLAKIADTSLTESFLAKQETIANFYETREFGKAMREVMTLADIANAYVADSAPWQLIKDDAKQEEAHQVCTNALN LFRILVTYLKPVLPKLAQDVEAFLQMELTWDNLDVDLAGHEIAKFKALMQRVEMKSIEAIIEASKENLQVTAEPEVKKQD KTPLEQDPISEEISFEDFAKIDLRIARIAKAEHVKEANKLLRLELDLGGETKQVFAGIKSAYAPEDLEGKLTVMVANLAP RQMRFGVSEGMVLAAGPGGKDLWIMEPHEGAQPGMKVK
Specific function: Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation [H]
COG id: COG0143
COG function: function code J; Methionyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI14043022, Length=632, Percent_Identity=28.7974683544304, Blast_Score=265, Evalue=9e-71, Organism=Homo sapiens, GI24308436, Length=518, Percent_Identity=24.7104247104247, Blast_Score=152, Evalue=1e-36, Organism=Escherichia coli, GI1788432, Length=682, Percent_Identity=65.6891495601173, Blast_Score=981, Evalue=0.0, Organism=Caenorhabditis elegans, GI17540794, Length=660, Percent_Identity=27.1212121212121, Blast_Score=247, Evalue=2e-65, Organism=Caenorhabditis elegans, GI212645096, Length=519, Percent_Identity=26.3969171483622, Blast_Score=152, Evalue=5e-37, Organism=Caenorhabditis elegans, GI71992781, Length=414, Percent_Identity=26.5700483091787, Blast_Score=112, Evalue=5e-25, Organism=Saccharomyces cerevisiae, GI6321704, Length=561, Percent_Identity=28.5204991087344, Blast_Score=248, Evalue=2e-66, Organism=Saccharomyces cerevisiae, GI6321610, Length=542, Percent_Identity=23.0627306273063, Blast_Score=107, Evalue=5e-24, Organism=Drosophila melanogaster, GI24655311, Length=563, Percent_Identity=29.8401420959147, Blast_Score=256, Evalue=4e-68, Organism=Drosophila melanogaster, GI21358483, Length=511, Percent_Identity=25.440313111546, Blast_Score=136, Evalue=5e-32,
Paralogues:
None
Copy number: 871 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR015413 - InterPro: IPR004495 - InterPro: IPR014758 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR014729 - InterPro: IPR002547 - InterPro: IPR009080 [H]
Pfam domain/function: PF09334 tRNA-synt_1g; PF01588 tRNA_bind [H]
EC number: =6.1.1.10 [H]
Molecular weight: Translated: 76845; Mature: 76714
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: PS50886 TRBD ; PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANSQRKILVTSALPYANGPIHLGHMLEYIQTDIWSRFQKLRGHECHYICADDAHGTPIM CCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE LKAQQLGMTPEDMIAQVQKEHEKDFADFNIQFDNFHSTHSDENRELASEIYIKLRDAGYI EEHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHEEEECCCCE KTKTISQLFDPEKSMFLPDRFVKGTCPRCKSEDQYGDNCDNCGATYSTTDLIDPKSAVSG EHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC ATPVMKDTEHFFFDLPSFEGMLKEWINSGSLQQEMANKLGEWFEQGLQQWDISRDAPYFG CCCCCCCCCHHEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC FEIPDAPGKFFYVWLDAPIGYMGSFKNLCNKRDDLNFDDFWSKDSTAEVYHFIGKDIVYF EECCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHH HSLFWPAMLEGAGLRKPTSVYAHGYVTVNGAKMSKSKGTFIKARTYLDNLDPEYLRYYYA HHHHHHHHHCCCCCCCCCEEEEEEEEEEECCEECCCCCCEEEEEHHHCCCCHHHHHHHHH AKLSSRIDDLDLNLEDFAQRVNSDLVGKLVNLASRTAGFISKRFDGKLAKIADTSLTESF HHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LAKQETIANFYETREFGKAMREVMTLADIANAYVADSAPWQLIKDDAKQEEAHQVCTNAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH NLFRILVTYLKPVLPKLAQDVEAFLQMELTWDNLDVDLAGHEIAKFKALMQRVEMKSIEA HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHH IIEASKENLQVTAEPEVKKQDKTPLEQDPISEEISFEDFAKIDLRIARIAKAEHVKEANK HHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LLRLELDLGGETKQVFAGIKSAYAPEDLEGKLTVMVANLAPRQMRFGVSEGMVLAAGPGG EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHCCCCCCEEEEECCCC KDLWIMEPHEGAQPGMKVK CEEEEECCCCCCCCCCCCC >Mature Secondary Structure ANSQRKILVTSALPYANGPIHLGHMLEYIQTDIWSRFQKLRGHECHYICADDAHGTPIM CCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE LKAQQLGMTPEDMIAQVQKEHEKDFADFNIQFDNFHSTHSDENRELASEIYIKLRDAGYI EEHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHEEEECCCCE KTKTISQLFDPEKSMFLPDRFVKGTCPRCKSEDQYGDNCDNCGATYSTTDLIDPKSAVSG EHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC ATPVMKDTEHFFFDLPSFEGMLKEWINSGSLQQEMANKLGEWFEQGLQQWDISRDAPYFG CCCCCCCCCHHEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC FEIPDAPGKFFYVWLDAPIGYMGSFKNLCNKRDDLNFDDFWSKDSTAEVYHFIGKDIVYF EECCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHH HSLFWPAMLEGAGLRKPTSVYAHGYVTVNGAKMSKSKGTFIKARTYLDNLDPEYLRYYYA HHHHHHHHHCCCCCCCCCEEEEEEEEEEECCEECCCCCCEEEEEHHHCCCCHHHHHHHHH AKLSSRIDDLDLNLEDFAQRVNSDLVGKLVNLASRTAGFISKRFDGKLAKIADTSLTESF HHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LAKQETIANFYETREFGKAMREVMTLADIANAYVADSAPWQLIKDDAKQEEAHQVCTNAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH NLFRILVTYLKPVLPKLAQDVEAFLQMELTWDNLDVDLAGHEIAKFKALMQRVEMKSIEA HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHH IIEASKENLQVTAEPEVKKQDKTPLEQDPISEEISFEDFAKIDLRIARIAKAEHVKEANK HHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LLRLELDLGGETKQVFAGIKSAYAPEDLEGKLTVMVANLAPRQMRFGVSEGMVLAAGPGG EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHCCCCCCEEEEECCCC KDLWIMEPHEGAQPGMKVK CEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA