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The map label for this gene is yciO [H]

Identifier: 157961471

GI number: 157961471

Start: 1989745

End: 1990365

Strand: Direct

Name: yciO [H]

Synonym: Spea_1645

Alternate gene names: 157961471

Gene position: 1989745-1990365 (Clockwise)

Preceding gene: 157961470

Following gene: 157961472

Centisome position: 38.45

GC content: 45.09

Gene sequence:

>621_bases
ATGAGTCAGTTTTTTTATATGCATGAGGAAAATCCTCAAGCACGCTTAATTAGTCAAGCCGTAAACGTGATTAAAACGGG
GGGGGTGATTGTTTACCCGACCGATTCGGGGTATGCATTAGGCTGTTTGATTGGCGATAAAGATGCGATGAGTAAAATTG
CTCGTATTAGACAGATCGACAATGACCATAACTTCTCGCTTATGTGCCGTGATCAGTCTGAGCTTGCTACTTACGCCCGT
GTCGATAATCAAGCCTATCGTTTGCTTAAGCAAAATACACCGGGACCTTACACGTTTATTTTTATGGCATCGAAAGAGGT
GCCTAAACGTCTGCAGAACCCGAAGAAGAAGACTATCGGTATTCGTGTCCCAGACAACGTGATTGCGTTGGCACTGTTAG
AAGCTCTAGGCGAGCCTTTGATGTCTACCAGTCTTATTTTGCCAGGCAAAGAGTTTACCGAGTCTGATCCTGAGCACATT
CGTGACATTCTAGAGCATCAAGTCGACTTGATTATTCATGGTGGTTATTTAGGCGAGAAGCCAACTACCGTTATCGACCT
ATCGGATGGTGAAATAGAAGTCATTCGTGAAGGTGCAGGCGACGTCACGCCATTCCTCTAG

Upstream 100 bases:

>100_bases
ATTTTCATTTCCCAAGTAGCTGGATTGAGATCGGTAAAAATATGTTCCAACCCCAAGGAGTGGATTGGGTTTGGCAGTCA
GATAAATGGAAGGTAGTACA

Downstream 100 bases:

>100_bases
AATTATCGCCGTTGTTAGTATTAGCGCTTGTTAAAATCAAATGGCAACGGCAATTGCTTTAATCAAATAGCATTTACAGG
TATAATCGCGCGTTTGCGAA

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSQFFYMHEENPQARLISQAVNVIKTGGVIVYPTDSGYALGCLIGDKDAMSKIARIRQIDNDHNFSLMCRDQSELATYAR
VDNQAYRLLKQNTPGPYTFIFMASKEVPKRLQNPKKKTIGIRVPDNVIALALLEALGEPLMSTSLILPGKEFTESDPEHI
RDILEHQVDLIIHGGYLGEKPTTVIDLSDGEIEVIREGAGDVTPFL

Sequences:

>Translated_206_residues
MSQFFYMHEENPQARLISQAVNVIKTGGVIVYPTDSGYALGCLIGDKDAMSKIARIRQIDNDHNFSLMCRDQSELATYAR
VDNQAYRLLKQNTPGPYTFIFMASKEVPKRLQNPKKKTIGIRVPDNVIALALLEALGEPLMSTSLILPGKEFTESDPEHI
RDILEHQVDLIIHGGYLGEKPTTVIDLSDGEIEVIREGAGDVTPFL
>Mature_205_residues
SQFFYMHEENPQARLISQAVNVIKTGGVIVYPTDSGYALGCLIGDKDAMSKIARIRQIDNDHNFSLMCRDQSELATYARV
DNQAYRLLKQNTPGPYTFIFMASKEVPKRLQNPKKKTIGIRVPDNVIALALLEALGEPLMSTSLILPGKEFTESDPEHIR
DILEHQVDLIIHGGYLGEKPTTVIDLSDGEIEVIREGAGDVTPFL

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=206, Percent_Identity=70.873786407767, Blast_Score=308, Evalue=1e-85,
Organism=Escherichia coli, GI2367210, Length=144, Percent_Identity=29.8611111111111, Blast_Score=68, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17537239, Length=189, Percent_Identity=26.984126984127, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22945; Mature: 22813

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFYMHEENPQARLISQAVNVIKTGGVIVYPTDSGYALGCLIGDKDAMSKIARIRQID
CCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHCC
NDHNFSLMCRDQSELATYARVDNQAYRLLKQNTPGPYTFIFMASKEVPKRLQNPKKKTIG
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHCCCCHHEEE
IRVPDNVIALALLEALGEPLMSTSLILPGKEFTESDPEHIRDILEHQVDLIIHGGYLGEK
EECCHHHHHHHHHHHHCCHHHHCEEECCCCCCCCCCHHHHHHHHHHCEEEEEECCCCCCC
PTTVIDLSDGEIEVIREGAGDVTPFL
CCEEEEECCCCEEEEECCCCCCCCCC
>Mature Secondary Structure 
SQFFYMHEENPQARLISQAVNVIKTGGVIVYPTDSGYALGCLIGDKDAMSKIARIRQID
CCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHCC
NDHNFSLMCRDQSELATYARVDNQAYRLLKQNTPGPYTFIFMASKEVPKRLQNPKKKTIG
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHCCCCHHEEE
IRVPDNVIALALLEALGEPLMSTSLILPGKEFTESDPEHIRDILEHQVDLIIHGGYLGEK
EECCHHHHHHHHHHHHCCHHHHCEEECCCCCCCCCCHHHHHHHHHHCEEEEEECCCCCCC
PTTVIDLSDGEIEVIREGAGDVTPFL
CCEEEEECCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]