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The map label for this gene is nqrD [H]

Identifier: 157961402

GI number: 157961402

Start: 1914231

End: 1914854

Strand: Direct

Name: nqrD [H]

Synonym: Spea_1576

Alternate gene names: 157961402

Gene position: 1914231-1914854 (Clockwise)

Preceding gene: 157961401

Following gene: 157961403

Centisome position: 36.99

GC content: 45.67

Gene sequence:

>624_bases
ATGAGTACTCAATCTATTTCGACTCGTGAAATGTTAATTGGGCCAATTTTCACTAATAACCCAGTGGCCATGCAAGTTTT
GGGTGTCTGCTCAGCGTTAGCGGTCAGTAACTCGATGCAGACTGCATTGGTGATGACGTTAGCCGTGACTTTTGTATTGG
TGTTTTCAAACCTGATTATCTCAAGTATACGTTCACTCATTCCAAACAGCGTACGTATTATCGCTCAGATGACGGTGATT
GCATCTTTGGTGATAGTGGTGGATATGGTGTTGCAAGACGTGGCCTATGAACTGTCGCGTCAGTTATCAGTATTTGTCGG
TCTGATCATCACCAACTGTATCATCATGGGCCGTGCAGAAGCCTTTGCCATGAAGAATCCGCCGCACTTAGCAGTGGTGG
ATGCGTTTGGTAATGCCATTGGATATGGCGTGATCTTACTGGGCGTGGCATTTGTTCGTGAGTTATTGGGTAGCGGCACA
CTGTTTGGCCATGAGATCTTACAGACTGTGGAAAATGGCGGTTGGTACTTAACGAACGAGATGTTCAAGTTACCACCGAG
TGCGTTCTTCTTAATTGGCCTGATGATCTGGTCAATTAACGTCATTCAACGCAAGCGAGGTTAA

Upstream 100 bases:

>100_bases
CATGACAGGGCGCGGCGTACAAAGGTCGATTCAGTTCTGGTTTGGTAGCGAAGGTTTCGAAGCTTTCTTTAAAAAATTAA
AAGCGTCGGAGGTATAAAGG

Downstream 100 bases:

>100_bases
GAGGCTTTATGGAACACTATATAAATCTGTTTATACAAGCTGCGTTTATCGACAACATGGCACTGTCATTCTTTATGGGC
ATGTGTACCTTCTTGGCTGT

Product: Na(+)-translocating NADH-quinone reductase subunit D

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D [H]

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MSTQSISTREMLIGPIFTNNPVAMQVLGVCSALAVSNSMQTALVMTLAVTFVLVFSNLIISSIRSLIPNSVRIIAQMTVI
ASLVIVVDMVLQDVAYELSRQLSVFVGLIITNCIIMGRAEAFAMKNPPHLAVVDAFGNAIGYGVILLGVAFVRELLGSGT
LFGHEILQTVENGGWYLTNEMFKLPPSAFFLIGLMIWSINVIQRKRG

Sequences:

>Translated_207_residues
MSTQSISTREMLIGPIFTNNPVAMQVLGVCSALAVSNSMQTALVMTLAVTFVLVFSNLIISSIRSLIPNSVRIIAQMTVI
ASLVIVVDMVLQDVAYELSRQLSVFVGLIITNCIIMGRAEAFAMKNPPHLAVVDAFGNAIGYGVILLGVAFVRELLGSGT
LFGHEILQTVENGGWYLTNEMFKLPPSAFFLIGLMIWSINVIQRKRG
>Mature_206_residues
STQSISTREMLIGPIFTNNPVAMQVLGVCSALAVSNSMQTALVMTLAVTFVLVFSNLIISSIRSLIPNSVRIIAQMTVIA
SLVIVVDMVLQDVAYELSRQLSVFVGLIITNCIIMGRAEAFAMKNPPHLAVVDAFGNAIGYGVILLGVAFVRELLGSGTL
FGHEILQTVENGGWYLTNEMFKLPPSAFFLIGLMIWSINVIQRKRG

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=209, Percent_Identity=36.3636363636364, Blast_Score=107, Evalue=4e-25,
Organism=Escherichia coli, GI1787914, Length=155, Percent_Identity=31.6129032258064, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011292 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 22436; Mature: 22305

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTQSISTREMLIGPIFTNNPVAMQVLGVCSALAVSNSMQTALVMTLAVTFVLVFSNLII
CCCCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
SSIRSLIPNSVRIIAQMTVIASLVIVVDMVLQDVAYELSRQLSVFVGLIITNCIIMGRAE
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
AFAMKNPPHLAVVDAFGNAIGYGVILLGVAFVRELLGSGTLFGHEILQTVENGGWYLTNE
HHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECH
MFKLPPSAFFLIGLMIWSINVIQRKRG
HHHCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STQSISTREMLIGPIFTNNPVAMQVLGVCSALAVSNSMQTALVMTLAVTFVLVFSNLII
CCCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
SSIRSLIPNSVRIIAQMTVIASLVIVVDMVLQDVAYELSRQLSVFVGLIITNCIIMGRAE
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
AFAMKNPPHLAVVDAFGNAIGYGVILLGVAFVRELLGSGTLFGHEILQTVENGGWYLTNE
HHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECH
MFKLPPSAFFLIGLMIWSINVIQRKRG
HHHCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA