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The map label for this gene is secD [H]

Identifier: 157961298

GI number: 157961298

Start: 1794684

End: 1796516

Strand: Direct

Name: secD [H]

Synonym: Spea_1472

Alternate gene names: 157961298

Gene position: 1794684-1796516 (Clockwise)

Preceding gene: 157961297

Following gene: 157961299

Centisome position: 34.68

GC content: 45.72

Gene sequence:

>1833_bases
ATGTGGAAAAACCTAATGGTGATAATCATTATCTCCATAGGTGCATTCTATGCGATACCAAACCTTTTCGGTGAAGACCA
CGCAGTTCAAGTGGTAGCCACACGAGGAGCAGAGGTCTCAGCGTCGACAATGTCGACAGTAAATGAAGTATTAAAGAGCA
AAGGAATCGCTGTTAAGCGTTCTGAGCTTGAAAATGGTCAGTTGTTAGTACGTGTAAATAATGGTGAAGAGCAATTACTT
GCTAAAGAAGCGATTAGCGATGCGTTAGGCGACAAGTACACCGTAGCACTAAACTTAGCTCCAGCGACTCCAGAGTGGCT
TGAGGCCATGGGCGGTTCGCCGATGAAACTAGGTTTGGACTTACGTGGTGGTGTTCACTTCTTAATGGAAGTGGATATGG
GCGAAGCGATTCGTAAGATGACCGAAGCCAAGGTTGCAGACTTCAGAACTGATTTACGAGCTGAGAAAATTCGCTACGCG
GGTATTCGTAATGGCGCCAAAGGCATCGAGATTAAGTTTCGCGATGCCGAGACTTTAACGAAAGCTGAAAACTTTCTTAA
GTCTCGCAGCAATGACATGGTCTTCCAAGACAAGACTGTTGGCGATGACTATGTCCTTGTTGCTAATCCAAGTGAAGCTT
ATTTAAAGCAGATTAAAGAGGAAGCACTACAGCAAAACATCACTACACTACGTAACCGTGTAAACGAGCTAGGTGTGGCT
GAACCTGTTGTGCAACGTCAAGGTGCTGAACGTATTATCGTTGAGCTACCAGGTGTTCAAGATACTGCTCGCGCGAAAGA
AATTTTGAGTGCGACAGCATCGATTGAATTCCATATGGTTGACGAGAAAGCCGATGTTCAAGCTGCAATGAGTGGCCGTG
TGCCTGCGGGGTCTGAGCTTTATCAGCGCCGTACCGGTGGTCCAGTTGTCTTGAAAAAAGCGGTTATGTTGACCGGTGAT
CATATTCAAGGTGCGCAGCCTAGCTTTGACGAATATAGCCGTCCGCAAGTCGCAATTAACCTTGATGCGAAAGGTGGTTC
AATTTTCTCTAACGTGACTAAAGACAACATCGGTAAGCCGATGGCAACGCTATTTATCGAGTATAAAGATACCGGTGAAA
AGAATGCTGACGGTAGCGTTAAGATGAAGAAGATTGAGGAAGTGATTTCGGTTGCTACCATTCAAGCGCGTCTTGGTCGT
AACTTTGTTATCACAGGTCTTGAGCATGCTGAAGCACAGAACCTAGCGTTATTGCTACGTGCTGGTGCGCTAATTGCTCC
TGTTTATATCGTTGAAGAACGTACCATTGGTCCAAGCCTTGGTAAGGAAAACATCGACAACGGTATGCAAGCCATGATCT
GGGGTATGGCTGTTGTACTTATCTTCATGTTGGTTTATTACCGTGGCTTTGGTCTTATTGCTAACTTAGCGCTAACCGCT
AACTTAGTGATGGTTGTGGGCGTAATGTCTATGATCCCTGGCGCAGTATTAACCCTACCTGGTATTGCTGGTATGGTGTT
AACTGTAGGTATGGCGGTTGATGGTAACGTACTGATTTACGAGCGTATTCGTGAAGAACTTCGTAACGGTCGTAGCGTAC
AGCAAGCGATTCATGAAGGATACGGTAACGCATTCTCAACTATCGCCGATGCGAACATCACTACCTTTATGACGGCGCTT
ATCTTATTTGCCGTAGGTACGGGAGCTGTGAAAGGCTTCGCGGTGACCTTAATGATCGGTATCGCCACTTCTATGTTTAC
TTGTATCGTAGGTACACGCTCAATCGTGAATGCGATATGGGGTGGTAAACGCGTGAAGAAACTGTCTATTTAA

Upstream 100 bases:

>100_bases
AAATCACGATTAAGAAGGATTATATTGCGGCCGTATTGCCAAAAGGCTCTATTAAGTCACTTTAAGCCAAGAGGGCGATG
GCGTGTTGAATAAATACCCG

Downstream 100 bases:

>100_bases
GGGGAAGTTGAAATGTTACAGGTTTTAAATGTTAAAGGTACAGTCAACTTCCTGCGTCACGCACTTCCTATCAGTATTTT
ATCTGCTGTGTTAGTGCTAG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 610; Mature: 610

Protein sequence:

>610_residues
MWKNLMVIIIISIGAFYAIPNLFGEDHAVQVVATRGAEVSASTMSTVNEVLKSKGIAVKRSELENGQLLVRVNNGEEQLL
AKEAISDALGDKYTVALNLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMTEAKVADFRTDLRAEKIRYA
GIRNGAKGIEIKFRDAETLTKAENFLKSRSNDMVFQDKTVGDDYVLVANPSEAYLKQIKEEALQQNITTLRNRVNELGVA
EPVVQRQGAERIIVELPGVQDTARAKEILSATASIEFHMVDEKADVQAAMSGRVPAGSELYQRRTGGPVVLKKAVMLTGD
HIQGAQPSFDEYSRPQVAINLDAKGGSIFSNVTKDNIGKPMATLFIEYKDTGEKNADGSVKMKKIEEVISVATIQARLGR
NFVITGLEHAEAQNLALLLRAGALIAPVYIVEERTIGPSLGKENIDNGMQAMIWGMAVVLIFMLVYYRGFGLIANLALTA
NLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTAL
ILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKKLSI

Sequences:

>Translated_610_residues
MWKNLMVIIIISIGAFYAIPNLFGEDHAVQVVATRGAEVSASTMSTVNEVLKSKGIAVKRSELENGQLLVRVNNGEEQLL
AKEAISDALGDKYTVALNLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMTEAKVADFRTDLRAEKIRYA
GIRNGAKGIEIKFRDAETLTKAENFLKSRSNDMVFQDKTVGDDYVLVANPSEAYLKQIKEEALQQNITTLRNRVNELGVA
EPVVQRQGAERIIVELPGVQDTARAKEILSATASIEFHMVDEKADVQAAMSGRVPAGSELYQRRTGGPVVLKKAVMLTGD
HIQGAQPSFDEYSRPQVAINLDAKGGSIFSNVTKDNIGKPMATLFIEYKDTGEKNADGSVKMKKIEEVISVATIQARLGR
NFVITGLEHAEAQNLALLLRAGALIAPVYIVEERTIGPSLGKENIDNGMQAMIWGMAVVLIFMLVYYRGFGLIANLALTA
NLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTAL
ILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKKLSI
>Mature_610_residues
MWKNLMVIIIISIGAFYAIPNLFGEDHAVQVVATRGAEVSASTMSTVNEVLKSKGIAVKRSELENGQLLVRVNNGEEQLL
AKEAISDALGDKYTVALNLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMTEAKVADFRTDLRAEKIRYA
GIRNGAKGIEIKFRDAETLTKAENFLKSRSNDMVFQDKTVGDDYVLVANPSEAYLKQIKEEALQQNITTLRNRVNELGVA
EPVVQRQGAERIIVELPGVQDTARAKEILSATASIEFHMVDEKADVQAAMSGRVPAGSELYQRRTGGPVVLKKAVMLTGD
HIQGAQPSFDEYSRPQVAINLDAKGGSIFSNVTKDNIGKPMATLFIEYKDTGEKNADGSVKMKKIEEVISVATIQARLGR
NFVITGLEHAEAQNLALLLRAGALIAPVYIVEERTIGPSLGKENIDNGMQAMIWGMAVVLIFMLVYYRGFGLIANLALTA
NLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTAL
ILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=612, Percent_Identity=58.3333333333333, Blast_Score=713, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 65968; Mature: 65968

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKNLMVIIIISIGAFYAIPNLFGEDHAVQVVATRGAEVSASTMSTVNEVLKSKGIAVKR
CCCCEEEEEEEHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEE
SELENGQLLVRVNNGEEQLLAKEAISDALGDKYTVALNLAPATPEWLEAMGGSPMKLGLD
CCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCCEEEEEE
LRGGVHFLMEVDMGEAIRKMTEAKVADFRTDLRAEKIRYAGIRNGAKGIEIKFRDAETLT
ECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHH
KAENFLKSRSNDMVFQDKTVGDDYVLVANPSEAYLKQIKEEALQQNITTLRNRVNELGVA
HHHHHHHCCCCCCEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EPVVQRQGAERIIVELPGVQDTARAKEILSATASIEFHMVDEKADVQAAMSGRVPAGSEL
CHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHEEEEEEECCCHHHHHHHCCCCCCCHHH
YQRRTGGPVVLKKAVMLTGDHIQGAQPSFDEYSRPQVAINLDAKGGSIFSNVTKDNIGKP
HHHCCCCCCEEEHHHHEECCCCCCCCCCCHHCCCCEEEEEEECCCCCHHHCCCHHHCCCC
MATLFIEYKDTGEKNADGSVKMKKIEEVISVATIQARLGRNFVITGLEHAEAQNLALLLR
EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
AGALIAPVYIVEERTIGPSLGKENIDNGMQAMIWGMAVVLIFMLVYYRGFGLIANLALTA
CCHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
NLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHEG
HHHHHHHHHHHCCCHHHHCCCHHHHHHHHHEEECCCEEEHHHHHHHHHCCHHHHHHHHHC
YGNAFSTIADANITTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRSIVNAIW
CCCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGKRVKKLSI
CCCCEEECCC
>Mature Secondary Structure
MWKNLMVIIIISIGAFYAIPNLFGEDHAVQVVATRGAEVSASTMSTVNEVLKSKGIAVKR
CCCCEEEEEEEHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEE
SELENGQLLVRVNNGEEQLLAKEAISDALGDKYTVALNLAPATPEWLEAMGGSPMKLGLD
CCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCCEEEEEE
LRGGVHFLMEVDMGEAIRKMTEAKVADFRTDLRAEKIRYAGIRNGAKGIEIKFRDAETLT
ECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHH
KAENFLKSRSNDMVFQDKTVGDDYVLVANPSEAYLKQIKEEALQQNITTLRNRVNELGVA
HHHHHHHCCCCCCEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EPVVQRQGAERIIVELPGVQDTARAKEILSATASIEFHMVDEKADVQAAMSGRVPAGSEL
CHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHEEEEEEECCCHHHHHHHCCCCCCCHHH
YQRRTGGPVVLKKAVMLTGDHIQGAQPSFDEYSRPQVAINLDAKGGSIFSNVTKDNIGKP
HHHCCCCCCEEEHHHHEECCCCCCCCCCCHHCCCCEEEEEEECCCCCHHHCCCHHHCCCC
MATLFIEYKDTGEKNADGSVKMKKIEEVISVATIQARLGRNFVITGLEHAEAQNLALLLR
EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
AGALIAPVYIVEERTIGPSLGKENIDNGMQAMIWGMAVVLIFMLVYYRGFGLIANLALTA
CCHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
NLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHEG
HHHHHHHHHHHCCCHHHHCCCHHHHHHHHHEEECCCEEEHHHHHHHHHCCHHHHHHHHHC
YGNAFSTIADANITTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRSIVNAIW
CCCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGKRVKKLSI
CCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]