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The map label for this gene is smpA [H]

Identifier: 157961113

GI number: 157961113

Start: 1568161

End: 1568655

Strand: Reverse

Name: smpA [H]

Synonym: Spea_1285

Alternate gene names: 157961113

Gene position: 1568655-1568161 (Counterclockwise)

Preceding gene: 157961120

Following gene: 157961110

Centisome position: 30.31

GC content: 41.62

Gene sequence:

>495_bases
ATGACAATTAAAAAGAAAAGTCTTACCCTTTTGGGCGCTGCTGCGCTCTCGTTATCACTTAGTGGCTGTGGTGTTTTTGA
CTATTTGATCTATAAACCTGATATCCCTCAGGGTAACTATATGGAAAAACAACAAGTCGAAAAATTGCGCATAGACATGA
CTAAAGAGCAGGTTGAATACGTGCTTGGACGTCCAGTGCTGCGTGACAGTTTCTCTGATGATACCTGGTACTATGTCTAC
CACTATAAGAGTGGTCGTGACGCGAGCATCATCCATAAAGAACTTATTATTAACTTTGATGGCGATAAGCTCGCCGAAGT
GAAAGGTGATTACGAGTTAAGCTCAGAATTTAATACGCCATTGGAAGAGAGTAAGTTACCTGAGATCAATACACCTGAAG
GTGATCCACTGATCCCAGAGCAACGCCCTCAAGCTGAACCTTTGGTAGAAGAGAAAGAAACTCAACCAGAGACACTTTCT
GAAAAGTTTGAATAA

Upstream 100 bases:

>100_bases
AAGAATTACGTTCCAAGCACGCCTTGACGCAATAGCCCTTGTCATAAGGGGGATCGCTTGGGTATTATGACCGACAGATT
TTTATGAAGTAGCGCATTCA

Downstream 100 bases:

>100_bases
CTCTTAAACACAAGCGACCGTTCAACCGATTAGCTTGAAAAATGGCGAGTTCCTACAGGAAACTCGCCATTTTTATGCAT
TTTAATCAATCTTACTGATT

Product: SmpA/OmlA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MTIKKKSLTLLGAAALSLSLSGCGVFDYLIYKPDIPQGNYMEKQQVEKLRIDMTKEQVEYVLGRPVLRDSFSDDTWYYVY
HYKSGRDASIIHKELIINFDGDKLAEVKGDYELSSEFNTPLEESKLPEINTPEGDPLIPEQRPQAEPLVEEKETQPETLS
EKFE

Sequences:

>Translated_164_residues
MTIKKKSLTLLGAAALSLSLSGCGVFDYLIYKPDIPQGNYMEKQQVEKLRIDMTKEQVEYVLGRPVLRDSFSDDTWYYVY
HYKSGRDASIIHKELIINFDGDKLAEVKGDYELSSEFNTPLEESKLPEINTPEGDPLIPEQRPQAEPLVEEKETQPETLS
EKFE
>Mature_163_residues
TIKKKSLTLLGAAALSLSLSGCGVFDYLIYKPDIPQGNYMEKQQVEKLRIDMTKEQVEYVLGRPVLRDSFSDDTWYYVYH
YKSGRDASIIHKELIINFDGDKLAEVKGDYELSSEFNTPLEESKLPEINTPEGDPLIPEQRPQAEPLVEEKETQPETLSE
KFE

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=93, Percent_Identity=39.7849462365591, Blast_Score=88, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 18780; Mature: 18649

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKKKSLTLLGAAALSLSLSGCGVFDYLIYKPDIPQGNYMEKQQVEKLRIDMTKEQVEY
CCCCCCHHHHHHHHHHHEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHH
VLGRPVLRDSFSDDTWYYVYHYKSGRDASIIHKELIINFDGDKLAEVKGDYELSSEFNTP
HHCCCHHHCCCCCCEEEEEEEECCCCCHHEEEEEEEEECCCCEEECCCCCEEECCCCCCC
LEESKLPEINTPEGDPLIPEQRPQAEPLVEEKETQPETLSEKFE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
TIKKKSLTLLGAAALSLSLSGCGVFDYLIYKPDIPQGNYMEKQQVEKLRIDMTKEQVEY
CCCCCHHHHHHHHHHHEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHH
VLGRPVLRDSFSDDTWYYVYHYKSGRDASIIHKELIINFDGDKLAEVKGDYELSSEFNTP
HHCCCHHHCCCCCCEEEEEEEECCCCCHHEEEEEEEEECCCCEEECCCCCEEECCCCCCC
LEESKLPEINTPEGDPLIPEQRPQAEPLVEEKETQPETLSEKFE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA