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The map label for this gene is radC [C]

Identifier: 157961087

GI number: 157961087

Start: 1530156

End: 1530632

Strand: Reverse

Name: radC [C]

Synonym: Spea_1259

Alternate gene names: 157961087

Gene position: 1530632-1530156 (Counterclockwise)

Preceding gene: 157961089

Following gene: 157961086

Centisome position: 29.58

GC content: 45.07

Gene sequence:

>477_bases
ATGCCCGAAAAATTATTAGTTCCTCACCATATAACCTGGCCCAAAACAACTAGTGAAATTCTAGCCACTGCTGCCAATAT
CATTGCTGAAAAGTTTGTTCATAACGATGCCTTCACCAATCCCGAAGCAACCAAGCAGTTTTTGACCTACAAGATGGCCA
ATTACGAGCGTGAGGTATTTGCGGTGATGATGCTCGATAACCAACATCGGCTGATTGAATTCAATGAGCTGTTTTTTGGC
ACCGTAGATGCCGCCAGCGTCTATCCAAGAGAAGTGGTAAAAGCCGTGTTAGCAGTTAATGCCGCAGCGGTTATCTTGGC
CCACAATCATCCATCTGGTGAAGCAGAGCCCTCTCAAGCTGACAAACTGATCACTAAGCGTTTAACGGATGCATTGGCTC
TGATCGATGTACGAGTACTCGATCATATAGTGGTAGGTAAAACACCAGTGTCATTTACTGAACGTGGCTTGCTATAG

Upstream 100 bases:

>100_bases
GCCCTCACGCAATAACCCATTAACTATCTATCCAACTCAAAAAATTTTCATATTTATCAACTCTGCACATAGACCAACTA
AACAAACAAGGAGCCTCAAT

Downstream 100 bases:

>100_bases
CGCGGCGTACTCACCACTGACAAATATCAACTGATTGCCAAATCAATAAGGAGTACACCATGATCGAATTTACTGACAGC
TTTTCTCAAGCTTGCGTGGC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MPEKLLVPHHITWPKTTSEILATAANIIAEKFVHNDAFTNPEATKQFLTYKMANYEREVFAVMMLDNQHRLIEFNELFFG
TVDAASVYPREVVKAVLAVNAAAVILAHNHPSGEAEPSQADKLITKRLTDALALIDVRVLDHIVVGKTPVSFTERGLL

Sequences:

>Translated_158_residues
MPEKLLVPHHITWPKTTSEILATAANIIAEKFVHNDAFTNPEATKQFLTYKMANYEREVFAVMMLDNQHRLIEFNELFFG
TVDAASVYPREVVKAVLAVNAAAVILAHNHPSGEAEPSQADKLITKRLTDALALIDVRVLDHIVVGKTPVSFTERGLL
>Mature_157_residues
PEKLLVPHHITWPKTTSEILATAANIIAEKFVHNDAFTNPEATKQFLTYKMANYEREVFAVMMLDNQHRLIEFNELFFGT
VDAASVYPREVVKAVLAVNAAAVILAHNHPSGEAEPSQADKLITKRLTDALALIDVRVLDHIVVGKTPVSFTERGLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=118, Percent_Identity=52.5423728813559, Blast_Score=139, Evalue=9e-35,
Organism=Escherichia coli, GI1788997, Length=160, Percent_Identity=46.25, Blast_Score=138, Evalue=2e-34,
Organism=Escherichia coli, GI1788312, Length=123, Percent_Identity=55.2845528455285, Blast_Score=136, Evalue=7e-34,
Organism=Escherichia coli, GI2367100, Length=123, Percent_Identity=56.0975609756098, Blast_Score=135, Evalue=9e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 17590; Mature: 17458

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEKLLVPHHITWPKTTSEILATAANIIAEKFVHNDAFTNPEATKQFLTYKMANYEREVF
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEE
AVMMLDNQHRLIEFNELFFGTVDAASVYPREVVKAVLAVNAAAVILAHNHPSGEAEPSQA
EEEEECCCCCEEEECHHEEECCCHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHH
DKLITKRLTDALALIDVRVLDHIVVGKTPVSFTERGLL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCC
>Mature Secondary Structure 
PEKLLVPHHITWPKTTSEILATAANIIAEKFVHNDAFTNPEATKQFLTYKMANYEREVF
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEE
AVMMLDNQHRLIEFNELFFGTVDAASVYPREVVKAVLAVNAAAVILAHNHPSGEAEPSQA
EEEEECCCCCEEEECHHEEECCCHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHH
DKLITKRLTDALALIDVRVLDHIVVGKTPVSFTERGLL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]