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The map label for this gene is yfjD [H]

Identifier: 157960874

GI number: 157960874

Start: 1268473

End: 1269756

Strand: Reverse

Name: yfjD [H]

Synonym: Spea_1046

Alternate gene names: 157960874

Gene position: 1269756-1268473 (Counterclockwise)

Preceding gene: 157960875

Following gene: 157960871

Centisome position: 24.54

GC content: 44.31

Gene sequence:

>1284_bases
TTGGACGATATATCCACTGGCGTACTGTTATCTATTCTGTTCGTCTTAATCTTACTATCTGCTTACTTCTCTGGCTCAGA
AACAGCCATGATGTCACTCAACCGTTATCGTTTGCGTCACTTAGCTAATAGCGGGCATAAAGGCGCTAAGCGAGCCATAA
AGATGCTAGAACGTCCAGACCGTCTGATAGGGCTTATCCTTATAGGCAATAACCTAGTTAATATTTTAGCCTCCGCTATT
GCAACCATTATTGGAATTCGACTATTTGGTGATGTGGGGGTCGCCATCTCGACCGGTGTGTTAACGCTCGTCGTCCTTGT
GTTTGCTGAAGTCACCCCCAAGACAGTTGCCGCGCTTCACCCAGAACGCATTGCTTTCCCCTCCAGTGTTATCTTGCGTG
TTTTATTAGTGGTTCTCTCCCCTTTCGTTAAAGTCGTCAACTTCATCACTTCAGGCTTTTTGCATTTACTCGGTATTCAT
TCCGTCAAAAACGATGATGCACTTAGCCAAGAAGAGTTGCGTACTGTTGTAAATGAAGCTGGCGCCTTGATCCCGCAGCG
CCACCAAGAAATGCTGTTATCAATCATGGACCTTGAAAAAGTCACCGTAGATGACATCATGATCCCGCGTAACGAGCTGT
ACGCAATTAATATCAATGATGATTTTAAAAGCATTAATAAGCAGGTAATCCAAAGCCCGCACACCCGTGTTTTGCTTTAT
CGAGATACCATCGATGACGCGGTTGGTTTTGTACACTTACGTGATGCGCTGCGGCTTCAATCTAAAGGGCAATTTAGTAA
ATCATCCTTGCTGCGCGCCGTAAAAGAGTTGTACTTCATTCCAGAAGCTACACCGCTAAACGTGCAACTTTCTAACTTTC
AACATAATAAAGAGCGTATCGGCCTTGTTGTGGACGAATACGGCGATATTCAAGGCTTAGTGACCTTAGAGGATATTCTA
GAAGAGATTGTTGGTGACTTTACCACCTCGATGGTTGCCCCTCCGAGCGAAGATATTACCTTGCAGCAAGATGGTAGCTA
CCTGATTGAAGCGAGTATCAACATTCGTGACCTTAATAAAGAGATGAGTTGGCACTTCCCCATCGATGGCCCCAAGACTA
TCAATGGCCTAGTTCTCGAGTATCTTGAAGATATCCCAGAGCCTAATACTTCAATGCGTTTATACGGTTACCCGCTAGAG
GTTATTGATGTAGCGGATAATATGATTAAAACCGTTAGAGTCATGCCACAGCATTATTTGCCGCCTAAAGTTACTAACGA
TTAA

Upstream 100 bases:

>100_bases
CTTGACACCCTCTTTAAAGTTCTGTAATTACTAATTTCATAGTGCTTTTTCAGCTTTATTATTCGCCCCTTTCTTTAAAC
CACAGCGGAGCTCCAACATT

Downstream 100 bases:

>100_bases
GACTGTTAATGATTAAGAATGCGATCAATTAAAAACTTTTTTAAACATCAAAAAAGCGCTAATTAGCGCTTTTTTGATGT
TTAATTTATGCTTAGGCTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MDDISTGVLLSILFVLILLSAYFSGSETAMMSLNRYRLRHLANSGHKGAKRAIKMLERPDRLIGLILIGNNLVNILASAI
ATIIGIRLFGDVGVAISTGVLTLVVLVFAEVTPKTVAALHPERIAFPSSVILRVLLVVLSPFVKVVNFITSGFLHLLGIH
SVKNDDALSQEELRTVVNEAGALIPQRHQEMLLSIMDLEKVTVDDIMIPRNELYAININDDFKSINKQVIQSPHTRVLLY
RDTIDDAVGFVHLRDALRLQSKGQFSKSSLLRAVKELYFIPEATPLNVQLSNFQHNKERIGLVVDEYGDIQGLVTLEDIL
EEIVGDFTTSMVAPPSEDITLQQDGSYLIEASINIRDLNKEMSWHFPIDGPKTINGLVLEYLEDIPEPNTSMRLYGYPLE
VIDVADNMIKTVRVMPQHYLPPKVTND

Sequences:

>Translated_427_residues
MDDISTGVLLSILFVLILLSAYFSGSETAMMSLNRYRLRHLANSGHKGAKRAIKMLERPDRLIGLILIGNNLVNILASAI
ATIIGIRLFGDVGVAISTGVLTLVVLVFAEVTPKTVAALHPERIAFPSSVILRVLLVVLSPFVKVVNFITSGFLHLLGIH
SVKNDDALSQEELRTVVNEAGALIPQRHQEMLLSIMDLEKVTVDDIMIPRNELYAININDDFKSINKQVIQSPHTRVLLY
RDTIDDAVGFVHLRDALRLQSKGQFSKSSLLRAVKELYFIPEATPLNVQLSNFQHNKERIGLVVDEYGDIQGLVTLEDIL
EEIVGDFTTSMVAPPSEDITLQQDGSYLIEASINIRDLNKEMSWHFPIDGPKTINGLVLEYLEDIPEPNTSMRLYGYPLE
VIDVADNMIKTVRVMPQHYLPPKVTND
>Mature_427_residues
MDDISTGVLLSILFVLILLSAYFSGSETAMMSLNRYRLRHLANSGHKGAKRAIKMLERPDRLIGLILIGNNLVNILASAI
ATIIGIRLFGDVGVAISTGVLTLVVLVFAEVTPKTVAALHPERIAFPSSVILRVLLVVLSPFVKVVNFITSGFLHLLGIH
SVKNDDALSQEELRTVVNEAGALIPQRHQEMLLSIMDLEKVTVDDIMIPRNELYAININDDFKSINKQVIQSPHTRVLLY
RDTIDDAVGFVHLRDALRLQSKGQFSKSSLLRAVKELYFIPEATPLNVQLSNFQHNKERIGLVVDEYGDIQGLVTLEDIL
EEIVGDFTTSMVAPPSEDITLQQDGSYLIEASINIRDLNKEMSWHFPIDGPKTINGLVLEYLEDIPEPNTSMRLYGYPLE
VIDVADNMIKTVRVMPQHYLPPKVTND

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=365, Percent_Identity=26.027397260274, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI94681046, Length=323, Percent_Identity=23.5294117647059, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI40068055, Length=350, Percent_Identity=25.4285714285714, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI40068053, Length=350, Percent_Identity=25.4285714285714, Blast_Score=73, Evalue=4e-13,
Organism=Escherichia coli, GI145693175, Length=398, Percent_Identity=57.5376884422111, Blast_Score=488, Evalue=1e-139,
Organism=Escherichia coli, GI1790664, Length=415, Percent_Identity=26.5060240963855, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI87082033, Length=261, Percent_Identity=27.9693486590038, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786879, Length=273, Percent_Identity=25.6410256410256, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788119, Length=239, Percent_Identity=23.4309623430962, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47568; Mature: 47568

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDISTGVLLSILFVLILLSAYFSGSETAMMSLNRYRLRHLANSGHKGAKRAIKMLERPD
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
RLIGLILIGNNLVNILASAIATIIGIRLFGDVGVAISTGVLTLVVLVFAEVTPKTVAALH
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHCC
PERIAFPSSVILRVLLVVLSPFVKVVNFITSGFLHLLGIHSVKNDDALSQEELRTVVNEA
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
GALIPQRHQEMLLSIMDLEKVTVDDIMIPRNELYAININDDFKSINKQVIQSPHTRVLLY
CCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEECHHHHHHHHHHHCCCCCEEEEE
RDTIDDAVGFVHLRDALRLQSKGQFSKSSLLRAVKELYFIPEATPLNVQLSNFQHNKERI
ECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHC
GLVVDEYGDIQGLVTLEDILEEIVGDFTTSMVAPPSEDITLQQDGSYLIEASINIRDLNK
CEEEECCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCEECCC
EMSWHFPIDGPKTINGLVLEYLEDIPEPNTSMRLYGYPLEVIDVADNMIKTVRVMPQHYL
CCCEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCC
PPKVTND
CCCCCCC
>Mature Secondary Structure
MDDISTGVLLSILFVLILLSAYFSGSETAMMSLNRYRLRHLANSGHKGAKRAIKMLERPD
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
RLIGLILIGNNLVNILASAIATIIGIRLFGDVGVAISTGVLTLVVLVFAEVTPKTVAALH
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHCC
PERIAFPSSVILRVLLVVLSPFVKVVNFITSGFLHLLGIHSVKNDDALSQEELRTVVNEA
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
GALIPQRHQEMLLSIMDLEKVTVDDIMIPRNELYAININDDFKSINKQVIQSPHTRVLLY
CCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEECHHHHHHHHHHHCCCCCEEEEE
RDTIDDAVGFVHLRDALRLQSKGQFSKSSLLRAVKELYFIPEATPLNVQLSNFQHNKERI
ECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHC
GLVVDEYGDIQGLVTLEDILEEIVGDFTTSMVAPPSEDITLQQDGSYLIEASINIRDLNK
CEEEECCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCEECCC
EMSWHFPIDGPKTINGLVLEYLEDIPEPNTSMRLYGYPLEVIDVADNMIKTVRVMPQHYL
CCCEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCC
PPKVTND
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]