| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is ydfG [C]
Identifier: 157960713
GI number: 157960713
Start: 1082858
End: 1083610
Strand: Direct
Name: ydfG [C]
Synonym: Spea_0885
Alternate gene names: 157960713
Gene position: 1082858-1083610 (Clockwise)
Preceding gene: 157960711
Following gene: 157960716
Centisome position: 20.93
GC content: 47.28
Gene sequence:
>753_bases ATGACAAACCGTCAAAGGATATTAATCACTGGCGCAAGTTCAGGCCTAGGTAAAGGCATGGCCATCGAGTTTGCCAAGAA GGGGCGAGACCTAGCGCTATGTGCACGGCGAGTCGAACGTTTAGAAGTTCTCAAGCAAGAGTTACTGCAGTTAAATCCCA ATATTAAGGTTTCGGTCAAAGCACTCGATGTGAATCAGCATCAAGCTGTTTTTGCGGTGTTTAATGAGTTTAAGTCTGAG TTTGGACAGCTAGATAGAATTATTCTCAATGCGGGAATGGGGAAGGGCGCATCTATTGGCACTGGACATTTTGAGGCTAA CAAGCAAACTGCTGAAACCAATTTTGTCGCTCTATTGGCACAAGCTGAAGCGGCAATGGCCATTTTTCGTGAACAGAATT CTGGTCACTTAGTCACAATATCTTCAGTGAGTGCGGTGAGGGGCTTTAGACGAGCGATGACGGTTTATGCGGCCTCGAAG GCGGCGGTAACCTCGTTAACGGAAGGCATTCGTATCGATGTGATGCATACGCCGATTAAGGTCAGTTGTATTCATCCTGG GTTTATTCGTAGTGAAATTAATGAGCATGTGGCAAAGGTTCCCTTTATCGTCGATACGCAAACGGGTTGTAGGGCCATGA TAGCCGCTATAGAAGCCGAAAGGGCAAGCAGTTTCGTGCCACGTTGGCCTTGGTCACTATTGCGCTGGTTAATACCGCTT GTGCCGAACCGCTGGATAAGACGAATGAGTTGA
Upstream 100 bases:
>100_bases AGTCACCTCAGTATTGTCTAAGCCCTCTAGGTTTACATTCTCACCTCTGAGCAGTAGGTTAGATATTGGCTAGGGATGGT AACAGTGTTAAGGGGAGATG
Downstream 100 bases:
>100_bases TCAGGCTCATGTTCAGCGATATATCTTTGTTTTTAAACTAAGTCAGCATACTTTTAATCGTAGCGATTACGAAGTGTTGG GATATCAGTCAGGTATTCGA
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MTNRQRILITGASSGLGKGMAIEFAKKGRDLALCARRVERLEVLKQELLQLNPNIKVSVKALDVNQHQAVFAVFNEFKSE FGQLDRIILNAGMGKGASIGTGHFEANKQTAETNFVALLAQAEAAMAIFREQNSGHLVTISSVSAVRGFRRAMTVYAASK AAVTSLTEGIRIDVMHTPIKVSCIHPGFIRSEINEHVAKVPFIVDTQTGCRAMIAAIEAERASSFVPRWPWSLLRWLIPL VPNRWIRRMS
Sequences:
>Translated_250_residues MTNRQRILITGASSGLGKGMAIEFAKKGRDLALCARRVERLEVLKQELLQLNPNIKVSVKALDVNQHQAVFAVFNEFKSE FGQLDRIILNAGMGKGASIGTGHFEANKQTAETNFVALLAQAEAAMAIFREQNSGHLVTISSVSAVRGFRRAMTVYAASK AAVTSLTEGIRIDVMHTPIKVSCIHPGFIRSEINEHVAKVPFIVDTQTGCRAMIAAIEAERASSFVPRWPWSLLRWLIPL VPNRWIRRMS >Mature_249_residues TNRQRILITGASSGLGKGMAIEFAKKGRDLALCARRVERLEVLKQELLQLNPNIKVSVKALDVNQHQAVFAVFNEFKSEF GQLDRIILNAGMGKGASIGTGHFEANKQTAETNFVALLAQAEAAMAIFREQNSGHLVTISSVSAVRGFRRAMTVYAASKA AVTSLTEGIRIDVMHTPIKVSCIHPGFIRSEINEHVAKVPFIVDTQTGCRAMIAAIEAERASSFVPRWPWSLLRWLIPLV PNRWIRRMS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI109715829, Length=196, Percent_Identity=30.1020408163265, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI20149619, Length=194, Percent_Identity=31.4432989690722, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=29.8969072164948, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI210032110, Length=242, Percent_Identity=26.0330578512397, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI40807363, Length=244, Percent_Identity=26.6393442622951, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI157739938, Length=190, Percent_Identity=29.4736842105263, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI4503817, Length=186, Percent_Identity=28.494623655914, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI7657478, Length=198, Percent_Identity=28.7878787878788, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI310128830, Length=239, Percent_Identity=25.9414225941423, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI310115468, Length=239, Percent_Identity=25.9414225941423, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI40254992, Length=229, Percent_Identity=24.0174672489083, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI1787820, Length=184, Percent_Identity=27.7173913043478, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI87082100, Length=214, Percent_Identity=27.5700934579439, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1790717, Length=191, Percent_Identity=25.6544502617801, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI2367175, Length=199, Percent_Identity=28.1407035175879, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17564282, Length=245, Percent_Identity=26.9387755102041, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17560150, Length=188, Percent_Identity=27.1276595744681, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17562990, Length=188, Percent_Identity=28.7234042553192, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI72000259, Length=196, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17531453, Length=198, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17562908, Length=196, Percent_Identity=27.0408163265306, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17559104, Length=191, Percent_Identity=27.7486910994764, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71997402, Length=196, Percent_Identity=28.0612244897959, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193203115, Length=235, Percent_Identity=26.3829787234043, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193203117, Length=235, Percent_Identity=26.3829787234043, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193204405, Length=204, Percent_Identity=26.4705882352941, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17565030, Length=187, Percent_Identity=26.2032085561497, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17560220, Length=203, Percent_Identity=25.615763546798, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17563726, Length=193, Percent_Identity=26.9430051813472, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17562904, Length=196, Percent_Identity=26.0204081632653, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71994600, Length=192, Percent_Identity=26.0416666666667, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17562906, Length=196, Percent_Identity=26.530612244898, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560332, Length=189, Percent_Identity=28.042328042328, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI212646214, Length=221, Percent_Identity=24.8868778280543, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=35.2331606217617, Blast_Score=114, Evalue=1e-26, Organism=Drosophila melanogaster, GI21358495, Length=191, Percent_Identity=31.413612565445, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI116007236, Length=195, Percent_Identity=30.7692307692308, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=30.4347826086957, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24644339, Length=189, Percent_Identity=30.6878306878307, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24641232, Length=195, Percent_Identity=29.7435897435897, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI28571387, Length=207, Percent_Identity=28.9855072463768, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI23397609, Length=202, Percent_Identity=28.7128712871287, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24580925, Length=198, Percent_Identity=28.2828282828283, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24648944, Length=206, Percent_Identity=29.6116504854369, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI45554248, Length=205, Percent_Identity=24.8780487804878, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24640117, Length=205, Percent_Identity=24.8780487804878, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI21357041, Length=189, Percent_Identity=28.042328042328, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24641388, Length=197, Percent_Identity=30.9644670050761, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24648693, Length=198, Percent_Identity=28.7878787878788, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21355889, Length=198, Percent_Identity=28.7878787878788, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28571526, Length=194, Percent_Identity=26.8041237113402, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27610; Mature: 27478
Theoretical pI: Translated: 10.90; Mature: 10.90
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNRQRILITGASSGLGKGMAIEFAKKGRDLALCARRVERLEVLKQELLQLNPNIKVSVK CCCCCEEEEEECCCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE ALDVNQHQAVFAVFNEFKSEFGQLDRIILNAGMGKGASIGTGHFEANKQTAETNFVALLA EEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH QAEAAMAIFREQNSGHLVTISSVSAVRGFRRAMTVYAASKAAVTSLTEGIRIDVMHTPIK HHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEE VSCIHPGFIRSEINEHVAKVPFIVDTQTGCRAMIAAIEAERASSFVPRWPWSLLRWLIPL EEEECCHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH VPNRWIRRMS CCHHHHHCCC >Mature Secondary Structure TNRQRILITGASSGLGKGMAIEFAKKGRDLALCARRVERLEVLKQELLQLNPNIKVSVK CCCCEEEEEECCCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE ALDVNQHQAVFAVFNEFKSEFGQLDRIILNAGMGKGASIGTGHFEANKQTAETNFVALLA EEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH QAEAAMAIFREQNSGHLVTISSVSAVRGFRRAMTVYAASKAAVTSLTEGIRIDVMHTPIK HHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEE VSCIHPGFIRSEINEHVAKVPFIVDTQTGCRAMIAAIEAERASSFVPRWPWSLLRWLIPL EEEECCHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH VPNRWIRRMS CCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]