Click here to switch to the map view.

The map label for this gene is nosD [H]

Identifier: 157960339

GI number: 157960339

Start: 623257

End: 624576

Strand: Direct

Name: nosD [H]

Synonym: Spea_0510

Alternate gene names: 157960339

Gene position: 623257-624576 (Clockwise)

Preceding gene: 157960338

Following gene: 157960340

Centisome position: 12.04

GC content: 46.59

Gene sequence:

>1320_bases
ATGAATATATCACTGTTAAGTTTGCTAGGGCTGAACCGCTGTTCTGCCATGGTTCGCCTCATTATACTAACGGCGGGCTT
CGGCTATTGTATCAGCAGCTACGCCACAAACCTTTCTGTATCTAATACTCAAGAACTCAAACTCGCACTGACTCAAGCTC
AAGCGGGTGATCGGATCATTCTTGAATCGGGGCGCTATCAAGGGCCTGTGCAAATCCATCAATCCATAACGTTAACCAGT
CTAGGAACTAGCATCATCGAAGCCAGTGGCGTAGGTAGTGCTATTCAGGTGTTTGCTGAAAATGTGGAGATCTCCGGACT
CAGCATTGAAAACTGGGGTAATGATCATTATGAGCGTGATGCTGGGATATTGGTCGAGCCGGGCAGTGATAACGTTAAGA
TCCACAACAATCACTTACGTGGGGACGGCTTCGGTATTCGCGCCGATGAACTCAATAATATCCAGATCAATGATAACGTT
ATCGTGGGTAACATCACTCTGTACACCTTGGATCGTGGTGATGGTATTCATCTGCAAGACGTAATTGGCTCACAGATCAG
GGGCAATACTATCTCTGGAGTTCGTGACGGGGTGTATTTGGAGTCGAGTAGCCAAAGCAAAGTTTACGATAACCACCTGT
TCGACCAGCAGTACGGCATTCATTACATGTATACGGCAGATGACGAAGCCTTCAATAACCAGAGTTATCGGGTCGATGGT
GGCTATGCCTTGATGGATTCAAAGCGTATTTATCTGCACCGTAATCAGGTATGGGATGCGATCGATTTTGGCATCTTACT
CAATATGACTAAAGACTCGCTGGTGGAGTCCAATCGCGTCGAACAGATAGTTAACCGTAGCGAAAATAAAGTACAGGGCC
AGGAGGGCAAGGGCATTTTTGTCTACGGCGCCCGTGACAACACCATTGTTAAAAATCATTTCGCTCACTGTGATATTGGC
CTGTATATGGCGATGGGCGGTGAGGGCAACCGAGTCTATGAGAACCAGTTTATCGATAACTACAGTCAGGTGAAATATGT
CGGTGACGCGCAGCTCGAGTGGAGTCATCAAGGCCGAGGTAACCACTGGAGTGGTTATCTTGGTTGGGATCACAACTCTG
ATGGTATAGGCAATACGGCTTACCGCCCTAATGATAATATCGATAAGTTATTTTGGCTCTATCCAGAAGCTAACTTCTTG
ATGGATAGCCCGATTGTAGTGGTACTACGCTGGGTGCAGCGCCAGTTTGAAGTGACAGAGCCTAGTGGCATAGTCGATAG
TTTTCCATTGCTGAATGTTAATCCTGCTTTTGCTGATTAA

Upstream 100 bases:

>100_bases
CTTACCTATGAGCAGATCACCATTGGACTGTTAGCGGGTGAGTAAAAAGTAAGATGGTGTGTCTTTTCACATTAGTGGCT
TTGCGAGGTGGTATTAAGTG

Downstream 100 bases:

>100_bases
GCCCATTTTTCGTAGCCCATCAGGGTTGCCAATACTAATAACTAATAACTAATTGCTAATTATTGAGTGTTGAATGTTAA
TTGTTCGGAGAGTCAATGAA

Product: periplasmic copper-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MNISLLSLLGLNRCSAMVRLIILTAGFGYCISSYATNLSVSNTQELKLALTQAQAGDRIILESGRYQGPVQIHQSITLTS
LGTSIIEASGVGSAIQVFAENVEISGLSIENWGNDHYERDAGILVEPGSDNVKIHNNHLRGDGFGIRADELNNIQINDNV
IVGNITLYTLDRGDGIHLQDVIGSQIRGNTISGVRDGVYLESSSQSKVYDNHLFDQQYGIHYMYTADDEAFNNQSYRVDG
GYALMDSKRIYLHRNQVWDAIDFGILLNMTKDSLVESNRVEQIVNRSENKVQGQEGKGIFVYGARDNTIVKNHFAHCDIG
LYMAMGGEGNRVYENQFIDNYSQVKYVGDAQLEWSHQGRGNHWSGYLGWDHNSDGIGNTAYRPNDNIDKLFWLYPEANFL
MDSPIVVVLRWVQRQFEVTEPSGIVDSFPLLNVNPAFAD

Sequences:

>Translated_439_residues
MNISLLSLLGLNRCSAMVRLIILTAGFGYCISSYATNLSVSNTQELKLALTQAQAGDRIILESGRYQGPVQIHQSITLTS
LGTSIIEASGVGSAIQVFAENVEISGLSIENWGNDHYERDAGILVEPGSDNVKIHNNHLRGDGFGIRADELNNIQINDNV
IVGNITLYTLDRGDGIHLQDVIGSQIRGNTISGVRDGVYLESSSQSKVYDNHLFDQQYGIHYMYTADDEAFNNQSYRVDG
GYALMDSKRIYLHRNQVWDAIDFGILLNMTKDSLVESNRVEQIVNRSENKVQGQEGKGIFVYGARDNTIVKNHFAHCDIG
LYMAMGGEGNRVYENQFIDNYSQVKYVGDAQLEWSHQGRGNHWSGYLGWDHNSDGIGNTAYRPNDNIDKLFWLYPEANFL
MDSPIVVVLRWVQRQFEVTEPSGIVDSFPLLNVNPAFAD
>Mature_439_residues
MNISLLSLLGLNRCSAMVRLIILTAGFGYCISSYATNLSVSNTQELKLALTQAQAGDRIILESGRYQGPVQIHQSITLTS
LGTSIIEASGVGSAIQVFAENVEISGLSIENWGNDHYERDAGILVEPGSDNVKIHNNHLRGDGFGIRADELNNIQINDNV
IVGNITLYTLDRGDGIHLQDVIGSQIRGNTISGVRDGVYLESSSQSKVYDNHLFDQQYGIHYMYTADDEAFNNQSYRVDG
GYALMDSKRIYLHRNQVWDAIDFGILLNMTKDSLVESNRVEQIVNRSENKVQGQEGKGIFVYGARDNTIVKNHFAHCDIG
LYMAMGGEGNRVYENQFIDNYSQVKYVGDAQLEWSHQGRGNHWSGYLGWDHNSDGIGNTAYRPNDNIDKLFWLYPEANFL
MDSPIVVVLRWVQRQFEVTEPSGIVDSFPLLNVNPAFAD

Specific function: Involved in copper processing and transport; in the assembly of the copper chromophores of nitrous oxide reductase [H]

COG id: COG3420

COG function: function code P; Nitrous oxidase accessory protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006633
- InterPro:   IPR007742
- InterPro:   IPR022441
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF05048 NosD [H]

EC number: NA

Molecular weight: Translated: 48977; Mature: 48977

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISLLSLLGLNRCSAMVRLIILTAGFGYCISSYATNLSVSNTQELKLALTQAQAGDRII
CCEEEEHHHCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEE
LESGRYQGPVQIHQSITLTSLGTSIIEASGVGSAIQVFAENVEISGLSIENWGNDHYERD
EECCCCCCCEEEEEEEEEEHHCHHHHCCCCCCHHHHHHHHCEEEEEEEEECCCCCCCCCC
AGILVEPGSDNVKIHNNHLRGDGFGIRADELNNIQINDNVIVGNITLYTLDRGDGIHLQD
CCEEEECCCCCEEEECCEECCCCCEEECCCCCEEEECCCEEEEEEEEEEEECCCCEEHHH
VIGSQIRGNTISGVRDGVYLESSSQSKVYDNHLFDQQYGIHYMYTADDEAFNNQSYRVDG
HHCCCCCCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCCEEEEEECCCHHCCCCCEEECC
GYALMDSKRIYLHRNQVWDAIDFGILLNMTKDSLVESNRVEQIVNRSENKVQGQEGKGIF
CEEEEECCEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
VYGARDNTIVKNHFAHCDIGLYMAMGGEGNRVYENQFIDNYSQVKYVGDAQLEWSHQGRG
EECCCCCCEEECCCCCCCEEEEEEECCCCCEEEHHHHHCCCHHEEEECCCEEEECCCCCC
NHWSGYLGWDHNSDGIGNTAYRPNDNIDKLFWLYPEANFLMDSPIVVVLRWVQRQFEVTE
CCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHEECCC
PSGIVDSFPLLNVNPAFAD
CCCCCCCCCEEECCCCCCC
>Mature Secondary Structure
MNISLLSLLGLNRCSAMVRLIILTAGFGYCISSYATNLSVSNTQELKLALTQAQAGDRII
CCEEEEHHHCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEE
LESGRYQGPVQIHQSITLTSLGTSIIEASGVGSAIQVFAENVEISGLSIENWGNDHYERD
EECCCCCCCEEEEEEEEEEHHCHHHHCCCCCCHHHHHHHHCEEEEEEEEECCCCCCCCCC
AGILVEPGSDNVKIHNNHLRGDGFGIRADELNNIQINDNVIVGNITLYTLDRGDGIHLQD
CCEEEECCCCCEEEECCEECCCCCEEECCCCCEEEECCCEEEEEEEEEEEECCCCEEHHH
VIGSQIRGNTISGVRDGVYLESSSQSKVYDNHLFDQQYGIHYMYTADDEAFNNQSYRVDG
HHCCCCCCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCCEEEEEECCCHHCCCCCEEECC
GYALMDSKRIYLHRNQVWDAIDFGILLNMTKDSLVESNRVEQIVNRSENKVQGQEGKGIF
CEEEEECCEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
VYGARDNTIVKNHFAHCDIGLYMAMGGEGNRVYENQFIDNYSQVKYVGDAQLEWSHQGRG
EECCCCCCEEECCCCCCCEEEEEEECCCCCEEEHHHHHCCCHHEEEECCCEEEECCCCCC
NHWSGYLGWDHNSDGIGNTAYRPNDNIDKLFWLYPEANFLMDSPIVVVLRWVQRQFEVTE
CCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHEECCC
PSGIVDSFPLLNVNPAFAD
CCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2170125 [H]