| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157960332
Identifier: 157960332
GI number: 157960332
Start: 616645
End: 618675
Strand: Direct
Name: 157960332
Synonym: Spea_0503
Alternate gene names: NA
Gene position: 616645-618675 (Clockwise)
Preceding gene: 157960331
Following gene: 157960333
Centisome position: 11.92
GC content: 44.95
Gene sequence:
>2031_bases ATGAGACGGTGGAAACACAAGGTAGCATTAAGCGTGCTGTTTTGTTTTGGTGCCATTGCCAATGCGAACGCTGCTGGAAA ATACGACAGTATCCCTCAGATGGGTAAAACTGCTAAAGAGTCGATAGCTAATTATCAAGGAACGCAACAGATAAACGGCG TGAAAACGCTGCAAGACTATATTGTTCAAGAAGATGAGTTATTTGATTACCTATTCGAAAATCACCCAATGTTTAAATAT CAACAATCGGGTAACTTGATTGGTGATTACCATATCAGTGACCGTGGTGAAGAGTATTTAGATACGGGCCATAGCCCTGC ATATAGTAAAAGTGTTGGTAAGCCACGAGCGGTACAATATCGTTTAGGTGCCAAATCAATTCTAGATTATCCAAACAATT TCGTTGGTCCTGAGAAGTGTGCCGAATGTCATGCGACTCAATACGAGAAATGGCAGCGCTCGCGTCATGCTAAAACAATT CGTTTCCCTGGCGAACACCCAGAAGTGGATAACGATATTGAAAAAACCATGTACAACACCAAAGATACCTCAATCTTACC CGACGGTATTACCCCAGACATGATCTATGCAACTGTTGGTACGCCTCGTACTAAATACGGTTTCATCGATGCATGGCTCG TGCGTGGTACTTACCATATCAGAGACGGTTTATTACGCGACGGCACTGGTAAAATGGTTGCTGGTGCAAACCAGTTCTCT CGTGGTTGGGCTGAATGGCTAACCCCTGAGATGTCTAAGAAAATTAACGATGTTATCCCTGATTTCCCAATTACCCTTGA AGGTTTTGGTGGTTCAGGTTCGCACCAGCAAGGCATGAGCTCTTATGGTGCTAAGTATGAAAAAGAGATGTTGTTCCAAC CAGCAAGTTCTTACTGTGAAGTTTGTCATACGTTCAAGTTTGACTTCCAAAGCAAGCAAGAGTTCTTCGATGCCTTAGGC GATCCTAAGAAGCTTCAAGAGCACACTATCTCTCGTGGTATCGCTTGTGAAGAGTGTCATGGCGCAGGTGGTCACTTAGA TGGTGGTACTGGCGGCATGCAGTCTAACTGTGAACGTTGTCACCAGCGTTTCCAGTATGACCCAACGTTAATGGATACTC CTGAAGCACAAGAGAAGGGTGAATACGCCTTTGGTGTGAAGATGAAGTCTCTATGTCCATCATGTGGTACTGAAGGTTCA CAGATGTATAACTCTGTGCACTACGAGAAGGGCATGCGTTGTACTACATGTCACGATCCACACGAAGTGACGGATGGTTC TTGGCAGTCTGGTTTCACTACACCAAAGCTGAAGAAAGACTGTAAAGATTGTCACGAAGCACAAACGTTGATTGCTGAAA ATTCAGATACTCACAACCAGCAAACATGTCAAAGCTGTCACATGCCTAACATGGGTAGCTGTGAAAACTTCAAGGCATTG CAGTTCCCTGACCAAGCAGGCTTCGACGCAGTACGTAAGTCTCATATGTGGAAGATTGAAGTCGACCCTACTCTGAAGAC GTTGAACCCACCTGAAGGTGAGTCTCGTGCCGGTGGCCCAAGCGGTGTTAAAGGTTGGACAGTGGCTAAGAACGAAGAAG GTCGCAACTACTTAGACTTGATGTGGTCTTGTGCTCGTACCTCTATCTCTGACCACGATGTGGTTGAGAACAAAGGTTGT CACAGCCAGTTCCAGTCTGAACTAGAAAAAGGCCTACATTACGAAGATCAGTTAGAGATCTACGGTGAAGTTCAGAAGAT GCAAACGCCTGTTAAGGAAGTCTTCACAAAGGTTGAGCAAGCACTTGTACGCATCGACCAGCTATTAGAAGTGACTAAGT TGTCTACTGAAGACAAGACTCAAGTACTAATGCTAGCTGAGAAAGCGCAAGAGACTGTTGATCTAATCAAGAAAGATGGT TCTTGGGGGGTTCATGGCTTCCGTTACAGCCAGAAGCGTCTAGATGCTGCACTAACGTATGTTACGCAAGCGCAAAACAT TCTAGATGGAACAGGTTACGCAGCTAAGTAA
Upstream 100 bases:
>100_bases TTTAGCTCAATCGGTGAACGGTTAGTTTCAAAAATGTGGGCTTAAAAAAAAAGCCTGCAATAAACAGTAAAAATAAAATA ATGATAAGTAGGAGTGAATG
Downstream 100 bases:
>100_bases GCCGCCTAACTTAATCGCCTCGGCCGCCATTGCAGTGCAATGACTGCCGAGGCAATAGAGAGAAAAATGATGAAAAAAGC ACTTGGTCAAATCTTAGTAA
Product: cytochrome c
Products: NA
Alternate protein names: tRNA Synthetase Class II; Cytochrome C Family Protein
Number of amino acids: Translated: 676; Mature: 676
Protein sequence:
>676_residues MRRWKHKVALSVLFCFGAIANANAAGKYDSIPQMGKTAKESIANYQGTQQINGVKTLQDYIVQEDELFDYLFENHPMFKY QQSGNLIGDYHISDRGEEYLDTGHSPAYSKSVGKPRAVQYRLGAKSILDYPNNFVGPEKCAECHATQYEKWQRSRHAKTI RFPGEHPEVDNDIEKTMYNTKDTSILPDGITPDMIYATVGTPRTKYGFIDAWLVRGTYHIRDGLLRDGTGKMVAGANQFS RGWAEWLTPEMSKKINDVIPDFPITLEGFGGSGSHQQGMSSYGAKYEKEMLFQPASSYCEVCHTFKFDFQSKQEFFDALG DPKKLQEHTISRGIACEECHGAGGHLDGGTGGMQSNCERCHQRFQYDPTLMDTPEAQEKGEYAFGVKMKSLCPSCGTEGS QMYNSVHYEKGMRCTTCHDPHEVTDGSWQSGFTTPKLKKDCKDCHEAQTLIAENSDTHNQQTCQSCHMPNMGSCENFKAL QFPDQAGFDAVRKSHMWKIEVDPTLKTLNPPEGESRAGGPSGVKGWTVAKNEEGRNYLDLMWSCARTSISDHDVVENKGC HSQFQSELEKGLHYEDQLEIYGEVQKMQTPVKEVFTKVEQALVRIDQLLEVTKLSTEDKTQVLMLAEKAQETVDLIKKDG SWGVHGFRYSQKRLDAALTYVTQAQNILDGTGYAAK
Sequences:
>Translated_676_residues MRRWKHKVALSVLFCFGAIANANAAGKYDSIPQMGKTAKESIANYQGTQQINGVKTLQDYIVQEDELFDYLFENHPMFKY QQSGNLIGDYHISDRGEEYLDTGHSPAYSKSVGKPRAVQYRLGAKSILDYPNNFVGPEKCAECHATQYEKWQRSRHAKTI RFPGEHPEVDNDIEKTMYNTKDTSILPDGITPDMIYATVGTPRTKYGFIDAWLVRGTYHIRDGLLRDGTGKMVAGANQFS RGWAEWLTPEMSKKINDVIPDFPITLEGFGGSGSHQQGMSSYGAKYEKEMLFQPASSYCEVCHTFKFDFQSKQEFFDALG DPKKLQEHTISRGIACEECHGAGGHLDGGTGGMQSNCERCHQRFQYDPTLMDTPEAQEKGEYAFGVKMKSLCPSCGTEGS QMYNSVHYEKGMRCTTCHDPHEVTDGSWQSGFTTPKLKKDCKDCHEAQTLIAENSDTHNQQTCQSCHMPNMGSCENFKAL QFPDQAGFDAVRKSHMWKIEVDPTLKTLNPPEGESRAGGPSGVKGWTVAKNEEGRNYLDLMWSCARTSISDHDVVENKGC HSQFQSELEKGLHYEDQLEIYGEVQKMQTPVKEVFTKVEQALVRIDQLLEVTKLSTEDKTQVLMLAEKAQETVDLIKKDG SWGVHGFRYSQKRLDAALTYVTQAQNILDGTGYAAK >Mature_676_residues MRRWKHKVALSVLFCFGAIANANAAGKYDSIPQMGKTAKESIANYQGTQQINGVKTLQDYIVQEDELFDYLFENHPMFKY QQSGNLIGDYHISDRGEEYLDTGHSPAYSKSVGKPRAVQYRLGAKSILDYPNNFVGPEKCAECHATQYEKWQRSRHAKTI RFPGEHPEVDNDIEKTMYNTKDTSILPDGITPDMIYATVGTPRTKYGFIDAWLVRGTYHIRDGLLRDGTGKMVAGANQFS RGWAEWLTPEMSKKINDVIPDFPITLEGFGGSGSHQQGMSSYGAKYEKEMLFQPASSYCEVCHTFKFDFQSKQEFFDALG DPKKLQEHTISRGIACEECHGAGGHLDGGTGGMQSNCERCHQRFQYDPTLMDTPEAQEKGEYAFGVKMKSLCPSCGTEGS QMYNSVHYEKGMRCTTCHDPHEVTDGSWQSGFTTPKLKKDCKDCHEAQTLIAENSDTHNQQTCQSCHMPNMGSCENFKAL QFPDQAGFDAVRKSHMWKIEVDPTLKTLNPPEGESRAGGPSGVKGWTVAKNEEGRNYLDLMWSCARTSISDHDVVENKGC HSQFQSELEKGLHYEDQLEIYGEVQKMQTPVKEVFTKVEQALVRIDQLLEVTKLSTEDKTQVLMLAEKAQETVDLIKKDG SWGVHGFRYSQKRLDAALTYVTQAQNILDGTGYAAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75944; Mature: 75944
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: PS51008 MULTIHEME_CYTC L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRWKHKVALSVLFCFGAIANANAAGKYDSIPQMGKTAKESIANYQGTQQINGVKTLQDY CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH IVQEDELFDYLFENHPMFKYQQSGNLIGDYHISDRGEEYLDTGHSPAYSKSVGKPRAVQY HCCHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHHHCCCCCCHHHCCCCCCEEEE RLGAKSILDYPNNFVGPEKCAECHATQYEKWQRSRHAKTIRFPGEHPEVDNDIEKTMYNT ECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHCCC KDTSILPDGITPDMIYATVGTPRTKYGFIDAWLVRGTYHIRDGLLRDGTGKMVAGANQFS CCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCHHHHCCCCCCCCCCEEECCCHHH RGWAEWLTPEMSKKINDVIPDFPITLEGFGGSGSHQQGMSSYGAKYEKEMLFQPASSYCE HHHHHHCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCHHHHHHHHCCHHHHHH VCHTFKFDFQSKQEFFDALGDPKKLQEHTISRGIACEECHGAGGHLDGGTGGMQSNCERC HHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHH HQRFQYDPTLMDTPEAQEKGEYAFGVKMKSLCPSCGTEGSQMYNSVHYEKGMRCTTCHDP HHHHCCCCCCCCCCCHHHCCCEEECEEHHHHCCCCCCCHHHHHHHHHHHCCCEEECCCCC HEVTDGSWQSGFTTPKLKKDCKDCHEAQTLIAENSDTHNQQTCQSCHMPNMGSCENFKAL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCEE QFPDQAGFDAVRKSHMWKIEVDPTLKTLNPPEGESRAGGPSGVKGWTVAKNEEGRNYLDL CCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHH MWSCARTSISDHDVVENKGCHSQFQSELEKGLHYEDQLEIYGEVQKMQTPVKEVFTKVEQ HHHHHHCCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH ALVRIDQLLEVTKLSTEDKTQVLMLAEKAQETVDLIKKDGSWGVHGFRYSQKRLDAALTY HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH VTQAQNILDGTGYAAK HHHHHHHHCCCCCCCC >Mature Secondary Structure MRRWKHKVALSVLFCFGAIANANAAGKYDSIPQMGKTAKESIANYQGTQQINGVKTLQDY CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH IVQEDELFDYLFENHPMFKYQQSGNLIGDYHISDRGEEYLDTGHSPAYSKSVGKPRAVQY HCCHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHHHCCCCCCHHHCCCCCCEEEE RLGAKSILDYPNNFVGPEKCAECHATQYEKWQRSRHAKTIRFPGEHPEVDNDIEKTMYNT ECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHCCC KDTSILPDGITPDMIYATVGTPRTKYGFIDAWLVRGTYHIRDGLLRDGTGKMVAGANQFS CCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCHHHHCCCCCCCCCCEEECCCHHH RGWAEWLTPEMSKKINDVIPDFPITLEGFGGSGSHQQGMSSYGAKYEKEMLFQPASSYCE HHHHHHCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCHHHHHHHHCCHHHHHH VCHTFKFDFQSKQEFFDALGDPKKLQEHTISRGIACEECHGAGGHLDGGTGGMQSNCERC HHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHH HQRFQYDPTLMDTPEAQEKGEYAFGVKMKSLCPSCGTEGSQMYNSVHYEKGMRCTTCHDP HHHHCCCCCCCCCCCHHHCCCEEECEEHHHHCCCCCCCHHHHHHHHHHHCCCEEECCCCC HEVTDGSWQSGFTTPKLKKDCKDCHEAQTLIAENSDTHNQQTCQSCHMPNMGSCENFKAL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCEE QFPDQAGFDAVRKSHMWKIEVDPTLKTLNPPEGESRAGGPSGVKGWTVAKNEEGRNYLDL CCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHH MWSCARTSISDHDVVENKGCHSQFQSELEKGLHYEDQLEIYGEVQKMQTPVKEVFTKVEQ HHHHHHCCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH ALVRIDQLLEVTKLSTEDKTQVLMLAEKAQETVDLIKKDGSWGVHGFRYSQKRLDAALTY HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH VTQAQNILDGTGYAAK HHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA