Click here to switch to the map view.

The map label for this gene is yedE [H]

Identifier: 157960274

GI number: 157960274

Start: 553920

End: 555191

Strand: Direct

Name: yedE [H]

Synonym: Spea_0445

Alternate gene names: 157960274

Gene position: 553920-555191 (Clockwise)

Preceding gene: 157960273

Following gene: 157960275

Centisome position: 10.7

GC content: 48.51

Gene sequence:

>1272_bases
ATGTGGTTAACGTTTAAAAATCAGTTTTTTATTAAATTCTGGTCGCCTTTTGCTGCCGTGATAGCGGCGGGAATTTTGTC
GACCTATTTTTTTGGTCTTACCGGTTCACTTTGGGCGGTAACTGGCGAATTTACTCGCTGGGGTGGCCATGTATTACAGT
GGTTCGGTGCAGAGCCTGAGTCATGGCAGTATTTTAAAATCATTGGCCTTAATGGCACGCCGCTAGATCGCGTTGGCGGA
GTGATGATTATTGGTATGTTCGGTGGTTGTATGGCAGCGGTACTGTGGGCTAACAATCTTAAACTACGTATGCCAAGCTC
TAAGAAGCGTATCGCGCAGGCGCTGATTGGCGGCATGATTGCAGGCTTTGGAGCACGCCTAGCGATGGGCTGTAATTTGG
CGGCCTTCTTTACCGGTATTCCGCAGTTTACCCTGCATGCGTGGATCTTTGCTTTTGCGGCTGCCGCAGGTACTTATATC
GGCGCTAAGATCACCTTGATGCCATTTTTCCGCTCAAGTGCCACACTGAAAGCGGGTGGCTTGAAGAAAATCGTTAAGCC
AAATCCTAATCAGGTACAGAATCGTTTTCGCCTAGGCTGGCTAGTGTTTGCCGCTATGATAGGGCTATCACTGTATATCA
TGCAGAGTTCGACTAAGCTCGGCATCGCCATGTTAATGGGTATGATGTTTGGCTTGCTGATTGAGCGGGCGCAGATCTGT
TTTACCTCGGCATTTAGAGATATGTGGATCACTGGCCGAACCCATATGGCCAAGGCAATTATCTTGGGCATGGCGGTCAG
CGTGATTGGTATTTATAGCTATGTGCAGCTAGGCATGACGCCGAAAACCCTTTGGGCTGGCCCAAATGCGGTGATTGGTG
GCTTGCTATTTGGCATAGGTATTGTGATTGCTGGTGGTTGTGAAACCGGTTGGATGTACCGTGCGTTAGAAGGCCAAGTG
CACTTTTGGTGGGTGGGTCTTGGTAATATCATTGGCGCGACTATTCTAGCCTATTACTGGGATGTTGTTGCCGAGCCATT
GGCTACCAGCTGGGATAAGATAAACCTACTGGATGTGTTTGGGCCATTAGGTGGACTTGGCGTCACCTATCTATTGCTGG
GCTTATCGTTTGTGCTGATCTTAATGTGGGAGCACCACTTTTTTAAAAAGCAGAAAAGCCAGCAACAAGCGGCGGCAGCA
AAGCTTGCTGAGTTAAAAGCTGAGTTAAAGCTAGCTCCTGCGGCAATAGCAACGTCAGCAACACAAGCTTAA

Upstream 100 bases:

>100_bases
TTTATGTAATAAAACACTAAGTAATGTTGAAAATAACAACTTAGCTGTAATGTAATCAAGCTTGTCATTTAAGCTTTAAT
GTTAGTTGGTAATTTTAAAT

Downstream 100 bases:

>100_bases
AAAACCAGCTTACAAAATAGTGAATTGATTCATTTGTTTTATATTTGGCTCAAGCCACTTGAGCCTGTTTTGCTGAGGAG
CATTAAATGCCAGCATCTAT

Product: putative inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MWLTFKNQFFIKFWSPFAAVIAAGILSTYFFGLTGSLWAVTGEFTRWGGHVLQWFGAEPESWQYFKIIGLNGTPLDRVGG
VMIIGMFGGCMAAVLWANNLKLRMPSSKKRIAQALIGGMIAGFGARLAMGCNLAAFFTGIPQFTLHAWIFAFAAAAGTYI
GAKITLMPFFRSSATLKAGGLKKIVKPNPNQVQNRFRLGWLVFAAMIGLSLYIMQSSTKLGIAMLMGMMFGLLIERAQIC
FTSAFRDMWITGRTHMAKAIILGMAVSVIGIYSYVQLGMTPKTLWAGPNAVIGGLLFGIGIVIAGGCETGWMYRALEGQV
HFWWVGLGNIIGATILAYYWDVVAEPLATSWDKINLLDVFGPLGGLGVTYLLLGLSFVLILMWEHHFFKKQKSQQQAAAA
KLAELKAELKLAPAAIATSATQA

Sequences:

>Translated_423_residues
MWLTFKNQFFIKFWSPFAAVIAAGILSTYFFGLTGSLWAVTGEFTRWGGHVLQWFGAEPESWQYFKIIGLNGTPLDRVGG
VMIIGMFGGCMAAVLWANNLKLRMPSSKKRIAQALIGGMIAGFGARLAMGCNLAAFFTGIPQFTLHAWIFAFAAAAGTYI
GAKITLMPFFRSSATLKAGGLKKIVKPNPNQVQNRFRLGWLVFAAMIGLSLYIMQSSTKLGIAMLMGMMFGLLIERAQIC
FTSAFRDMWITGRTHMAKAIILGMAVSVIGIYSYVQLGMTPKTLWAGPNAVIGGLLFGIGIVIAGGCETGWMYRALEGQV
HFWWVGLGNIIGATILAYYWDVVAEPLATSWDKINLLDVFGPLGGLGVTYLLLGLSFVLILMWEHHFFKKQKSQQQAAAA
KLAELKAELKLAPAAIATSATQA
>Mature_423_residues
MWLTFKNQFFIKFWSPFAAVIAAGILSTYFFGLTGSLWAVTGEFTRWGGHVLQWFGAEPESWQYFKIIGLNGTPLDRVGG
VMIIGMFGGCMAAVLWANNLKLRMPSSKKRIAQALIGGMIAGFGARLAMGCNLAAFFTGIPQFTLHAWIFAFAAAAGTYI
GAKITLMPFFRSSATLKAGGLKKIVKPNPNQVQNRFRLGWLVFAAMIGLSLYIMQSSTKLGIAMLMGMMFGLLIERAQIC
FTSAFRDMWITGRTHMAKAIILGMAVSVIGIYSYVQLGMTPKTLWAGPNAVIGGLLFGIGIVIAGGCETGWMYRALEGQV
HFWWVGLGNIIGATILAYYWDVVAEPLATSWDKINLLDVFGPLGGLGVTYLLLGLSFVLILMWEHHFFKKQKSQQQAAAA
KLAELKAELKLAPAAIATSATQA

Specific function: Unknown

COG id: COG2391

COG function: function code R; Predicted transporter component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0394 family [H]

Homologues:

Organism=Escherichia coli, GI1788238, Length=393, Percent_Identity=68.4478371501272, Blast_Score=528, Evalue=1e-151,
Organism=Escherichia coli, GI1788323, Length=102, Percent_Identity=38.2352941176471, Blast_Score=79, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007272 [H]

Pfam domain/function: PF04143 DUF395 [H]

EC number: NA

Molecular weight: Translated: 46077; Mature: 46077

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWLTFKNQFFIKFWSPFAAVIAAGILSTYFFGLTGSLWAVTGEFTRWGGHVLQWFGAEPE
CEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCCC
SWQYFKIIGLNGTPLDRVGGVMIIGMFGGCMAAVLWANNLKLRMPSSKKRIAQALIGGMI
CCEEEEEEECCCCCHHHHCCEEEEHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHH
AGFGARLAMGCNLAAFFTGIPQFTLHAWIFAFAAAAGTYIGAKITLMPFFRSSATLKAGG
HHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC
LKKIVKPNPNQVQNRFRLGWLVFAAMIGLSLYIMQSSTKLGIAMLMGMMFGLLIERAQIC
CHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
FTSAFRDMWITGRTHMAKAIILGMAVSVIGIYSYVQLGMTPKTLWAGPNAVIGGLLFGIG
HHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHH
IVIAGGCETGWMYRALEGQVHFWWVGLGNIIGATILAYYWDVVAEPLATSWDKINLLDVF
HHEECCCCCCCEEHEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHH
GPLGGLGVTYLLLGLSFVLILMWEHHFFKKQKSQQQAAAAKLAELKAELKLAPAAIATSA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TQA
CCC
>Mature Secondary Structure
MWLTFKNQFFIKFWSPFAAVIAAGILSTYFFGLTGSLWAVTGEFTRWGGHVLQWFGAEPE
CEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCCC
SWQYFKIIGLNGTPLDRVGGVMIIGMFGGCMAAVLWANNLKLRMPSSKKRIAQALIGGMI
CCEEEEEEECCCCCHHHHCCEEEEHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHH
AGFGARLAMGCNLAAFFTGIPQFTLHAWIFAFAAAAGTYIGAKITLMPFFRSSATLKAGG
HHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC
LKKIVKPNPNQVQNRFRLGWLVFAAMIGLSLYIMQSSTKLGIAMLMGMMFGLLIERAQIC
CHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
FTSAFRDMWITGRTHMAKAIILGMAVSVIGIYSYVQLGMTPKTLWAGPNAVIGGLLFGIG
HHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHH
IVIAGGCETGWMYRALEGQVHFWWVGLGNIIGATILAYYWDVVAEPLATSWDKINLLDVF
HHEECCCCCCCEEHEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHH
GPLGGLGVTYLLLGLSFVLILMWEHHFFKKQKSQQQAAAAKLAELKAELKLAPAAIATSA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TQA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8371104; 9097040; 9278503 [H]