| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is fdnG [H]
Identifier: 157960267
GI number: 157960267
Start: 544215
End: 546605
Strand: Direct
Name: fdnG [H]
Synonym: Spea_0438
Alternate gene names: 157960267
Gene position: 544215-546605 (Clockwise)
Preceding gene: 157960266
Following gene: 157960268
Centisome position: 10.52
GC content: 47.34
Gene sequence:
>2391_bases ATGACCAACCACTGGATCGATATTAAGAACGCAAGTGTCGTGGTGATCATGGGCGGTAATGCCGCTGAAGCACATCCTGT CGGTTTCGGTTGGGTAACGGAAGCTATGGAACACAATAACGCCAAATTGGTGGTTGTGGATCCACGCTTTAACCGCAGTG CAGCATTAGCTGACTGCTATGCACCACTTCGTAGTGGTACTGATATCGCATTCCTTTTAGGTCTAAGTCGATACCTCATT GAGACTAAACAAGTTAACTACGAGTATGTTAAAGCGTATACCAACGCAAGTTACATCATTCGTGAAGATTTCGAATTCAA TGAAGGCCTATTTAGTGGTTTTGATGAGAAGAGTCGTACTTACGACAAGGATTCTTGGTACTACGAATTAGATGAAGATG GTTATGCCAAAGTCGATGAAACTTATGAGCACCCACGTTGTGTGTGGAACTTATTAAAGAATCACGTTGACCGTTACGAC TTTGAAACCGTAAGCAATATTACCGGTACACCAGTTGAAGATTATGAAAAAGTTTGTGCGTTAATTGGTAGCACACACGT TCATGATAAAGCGGCGACCTTTATGTATGCATTGGGCTGGACCCACCACACTAAAGGCGCACAGAACATTCGTTCTATGG CATTAGTGCAGTTGCTACTGGGTAATATCGGCGTATTGGGTGGTGGTGTTAACGCACTGCGTGGTCACTCAAACGTACAG GGCGCAACCGACATGGGTCTGTTATGTCAGAACCTGCCTGGTTACTTAAAGCTACCAAATGACAACGATACCGATTTAGC GACATACCTAGATAACTATACGCCTAAGCCGTTGCGTCCAGGCCAAACTAACTATTGGTCTAATTATCCTAAGTTCTTTA TCTCACAGATGAAGAGTTTCTGGGGCGAGAACGCGACAGCGGCGAATAACTTTGGTTATGACTGGTTACCTAAGTGGGAT TTACAGTACGACTACACCAAGCACATCGACATGATGTACAAGGGCCAAGTTAACGGTTACTTCGTGCAAGGGGTTAACGC AATTAACTCTATGCCAAACCGTAACAAGACCTTAGCGGCGTTATGTAAGCTCAAATACTTGGTCGTAATGGATCCGCTAG CGACAGAGACTTCTGTATTCTGGCAAAAAGCCGGTGAGTTTAACGACGTGCAGCCAAGCGAAATTCAAACGCAAGTTTTC CGCTTACCTACGACGTTATTTGCTGAAGAGGAAGGCTGTATCGTTAACTCGGGTCGCTGGATGCAGTGGCACTGGAAGGG CGCTAATCCACCTGGTGAGTCAAAGCCTGATGCTGAAATTTTATCTGGCATCTTAATGAAGCTGCGTGAGCTGTATAAAG CGGAAGGCGGCGTGCTACCAGAGCCGATTGAAGCGGTTAACTGGGCAGGCTATCACAATCCACACTTCCCACACGGCGAA GAAGTGGCAAAAGAGCTTAACGGTATCGATCTTAAAACCGGTAAGCAGCTTGATAGCTTTAGTCAGTTAAAAGACGACGG TAGTACCTCATGTGGTTGCTGGATCTACTCAGGTTCCTGGACCGAAGCCGGCAACATGATGGCGCGTCGTGATAACTCTG ATACGTCAGGCAAAGGTATCACCCCAGGTTGGGCATTCTCGTGGCCACAAAACCGCCGCGTACTATACAACCGCGCATCC TGTGATGTTAACGGTAAGCCTTGGGATCCAAAGCGCATGATCGTTGAGTGGAACCACGGCAAGTGGCACGGCATCGACGT GGGTGACTTCAATATGACGTTACCGCCAAAAGAGTCGGCGCATCCGTTCATTATGCAGCCTGAAGGTGTGGGTCGTTTCT TCTCACTTAAGATGCTAGCTGAAGGGCCATTCCCTGAGCATTACGAGCCAATGGAGACGCCAATCGGCACTAACCCATTG CACCCGAAGGTGATCAGTAACCCTGCGGTACGTTTGCTAGAGGGTGTTGAAGAGACATTGGGTTCACATACGGAATTTCC ATATGTGTGTACCACTTACTCCTTAACCGAACACTTTAACTTCTGGACGATTCACTGTCGTTTAGCGGCGATTTCGATGC CTGAAACTTTCGTTGAGTTAGACGAAATTCTCGCAGCGAAGAAAGGCATTGCTAATGGCGATTGGGTCAAGGTGAGCTCT AAGCGCGGTAGCTTGATGACCAAAGCTTTGGTGACTAAGCGTCTGCAGCCACTTAAGGTGCATGGCCAGATGGTGCATAC CGTTGGCCTGCCGCGTCATGGTGGCTATAACGGTCTAACTCGTAGAAGTTCTAGTTGTAACGTACTGACCACAGAAGTGG GCGATGCAAATACACAGGTGCCTGAATTTAAAGCATTCCTTGTGGATATTGCTAAGGCTGAGGGAGTTTAA
Upstream 100 bases:
>100_bases GTTTGCTCGTTCTCTTGGCCTAGTGGCCATCGATACTATTGCGCGTAACTGACACTCCCCAACGGTAGCAAGTCTTGCTC CAACATTTGGGCGCGGTGCC
Downstream 100 bases:
>100_bases TCATGTCTGCTCAAGATATCATTTTAAGCTCTGGCACATCAGAGCTCACTCCTGCAGCGCAGGTACGCCGTAAGTTAAGT AAGGTGGCCAAGTTATTCGA
Product: formate dehydrogenase subunit alpha
Products: NA
Alternate protein names: Anaerobic formate dehydrogenase major subunit; Formate dehydrogenase-N subunit alpha; FDH-N subunit alpha [H]
Number of amino acids: Translated: 796; Mature: 795
Protein sequence:
>796_residues MTNHWIDIKNASVVVIMGGNAAEAHPVGFGWVTEAMEHNNAKLVVVDPRFNRSAALADCYAPLRSGTDIAFLLGLSRYLI ETKQVNYEYVKAYTNASYIIREDFEFNEGLFSGFDEKSRTYDKDSWYYELDEDGYAKVDETYEHPRCVWNLLKNHVDRYD FETVSNITGTPVEDYEKVCALIGSTHVHDKAATFMYALGWTHHTKGAQNIRSMALVQLLLGNIGVLGGGVNALRGHSNVQ GATDMGLLCQNLPGYLKLPNDNDTDLATYLDNYTPKPLRPGQTNYWSNYPKFFISQMKSFWGENATAANNFGYDWLPKWD LQYDYTKHIDMMYKGQVNGYFVQGVNAINSMPNRNKTLAALCKLKYLVVMDPLATETSVFWQKAGEFNDVQPSEIQTQVF RLPTTLFAEEEGCIVNSGRWMQWHWKGANPPGESKPDAEILSGILMKLRELYKAEGGVLPEPIEAVNWAGYHNPHFPHGE EVAKELNGIDLKTGKQLDSFSQLKDDGSTSCGCWIYSGSWTEAGNMMARRDNSDTSGKGITPGWAFSWPQNRRVLYNRAS CDVNGKPWDPKRMIVEWNHGKWHGIDVGDFNMTLPPKESAHPFIMQPEGVGRFFSLKMLAEGPFPEHYEPMETPIGTNPL HPKVISNPAVRLLEGVEETLGSHTEFPYVCTTYSLTEHFNFWTIHCRLAAISMPETFVELDEILAAKKGIANGDWVKVSS KRGSLMTKALVTKRLQPLKVHGQMVHTVGLPRHGGYNGLTRRSSSCNVLTTEVGDANTQVPEFKAFLVDIAKAEGV
Sequences:
>Translated_796_residues MTNHWIDIKNASVVVIMGGNAAEAHPVGFGWVTEAMEHNNAKLVVVDPRFNRSAALADCYAPLRSGTDIAFLLGLSRYLI ETKQVNYEYVKAYTNASYIIREDFEFNEGLFSGFDEKSRTYDKDSWYYELDEDGYAKVDETYEHPRCVWNLLKNHVDRYD FETVSNITGTPVEDYEKVCALIGSTHVHDKAATFMYALGWTHHTKGAQNIRSMALVQLLLGNIGVLGGGVNALRGHSNVQ GATDMGLLCQNLPGYLKLPNDNDTDLATYLDNYTPKPLRPGQTNYWSNYPKFFISQMKSFWGENATAANNFGYDWLPKWD LQYDYTKHIDMMYKGQVNGYFVQGVNAINSMPNRNKTLAALCKLKYLVVMDPLATETSVFWQKAGEFNDVQPSEIQTQVF RLPTTLFAEEEGCIVNSGRWMQWHWKGANPPGESKPDAEILSGILMKLRELYKAEGGVLPEPIEAVNWAGYHNPHFPHGE EVAKELNGIDLKTGKQLDSFSQLKDDGSTSCGCWIYSGSWTEAGNMMARRDNSDTSGKGITPGWAFSWPQNRRVLYNRAS CDVNGKPWDPKRMIVEWNHGKWHGIDVGDFNMTLPPKESAHPFIMQPEGVGRFFSLKMLAEGPFPEHYEPMETPIGTNPL HPKVISNPAVRLLEGVEETLGSHTEFPYVCTTYSLTEHFNFWTIHCRLAAISMPETFVELDEILAAKKGIANGDWVKVSS KRGSLMTKALVTKRLQPLKVHGQMVHTVGLPRHGGYNGLTRRSSSCNVLTTEVGDANTQVPEFKAFLVDIAKAEGV >Mature_795_residues TNHWIDIKNASVVVIMGGNAAEAHPVGFGWVTEAMEHNNAKLVVVDPRFNRSAALADCYAPLRSGTDIAFLLGLSRYLIE TKQVNYEYVKAYTNASYIIREDFEFNEGLFSGFDEKSRTYDKDSWYYELDEDGYAKVDETYEHPRCVWNLLKNHVDRYDF ETVSNITGTPVEDYEKVCALIGSTHVHDKAATFMYALGWTHHTKGAQNIRSMALVQLLLGNIGVLGGGVNALRGHSNVQG ATDMGLLCQNLPGYLKLPNDNDTDLATYLDNYTPKPLRPGQTNYWSNYPKFFISQMKSFWGENATAANNFGYDWLPKWDL QYDYTKHIDMMYKGQVNGYFVQGVNAINSMPNRNKTLAALCKLKYLVVMDPLATETSVFWQKAGEFNDVQPSEIQTQVFR LPTTLFAEEEGCIVNSGRWMQWHWKGANPPGESKPDAEILSGILMKLRELYKAEGGVLPEPIEAVNWAGYHNPHFPHGEE VAKELNGIDLKTGKQLDSFSQLKDDGSTSCGCWIYSGSWTEAGNMMARRDNSDTSGKGITPGWAFSWPQNRRVLYNRASC DVNGKPWDPKRMIVEWNHGKWHGIDVGDFNMTLPPKESAHPFIMQPEGVGRFFSLKMLAEGPFPEHYEPMETPIGTNPLH PKVISNPAVRLLEGVEETLGSHTEFPYVCTTYSLTEHFNFWTIHCRLAAISMPETFVELDEILAAKKGIANGDWVKVSSK RGSLMTKALVTKRLQPLKVHGQMVHTVGLPRHGGYNGLTRRSSSCNVLTTEVGDANTQVPEFKAFLVDIAKAEGV
Specific function: Formate dehydrogenase allows E.coli to use formate as major electron donor during anaerobic respiration, when nitrate is used as electron acceptor. The alpha subunit forms the active site [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI3868719, Length=805, Percent_Identity=61.2422360248447, Blast_Score=1045, Evalue=0.0, Organism=Escherichia coli, GI3868720, Length=805, Percent_Identity=60, Blast_Score=1029, Evalue=0.0, Organism=Escherichia coli, GI3868721, Length=448, Percent_Identity=23.8839285714286, Blast_Score=111, Evalue=2e-25, Organism=Escherichia coli, GI171474008, Length=239, Percent_Identity=29.2887029288703, Blast_Score=80, Evalue=7e-16, Organism=Escherichia coli, GI87081797, Length=239, Percent_Identity=28.4518828451883, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1787870, Length=238, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=5e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006443 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.2.1.2 [H]
Molecular weight: Translated: 89406; Mature: 89275
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: PS00932 MOLYBDOPTERIN_PROK_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNHWIDIKNASVVVIMGGNAAEAHPVGFGWVTEAMEHNNAKLVVVDPRFNRSAALADCY CCCCEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH APLRSGTDIAFLLGLSRYLIETKQVNYEYVKAYTNASYIIREDFEFNEGLFSGFDEKSRT HHHCCCCCCHHHHHHHHHHHHHHCCCHHHEEEECCCEEEEEECCCCCCHHHCCCCHHHCC YDKDSWYYELDEDGYAKVDETYEHPRCVWNLLKNHVDRYDFETVSNITGTPVEDYEKVCA CCCCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHH LIGSTHVHDKAATFMYALGWTHHTKGAQNIRSMALVQLLLGNIGVLGGGVNALRGHSNVQ HHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCC GATDMGLLCQNLPGYLKLPNDNDTDLATYLDNYTPKPLRPGQTNYWSNYPKFFISQMKSF CCHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH WGENATAANNFGYDWLPKWDLQYDYTKHIDMMYKGQVNGYFVQGVNAINSMPNRNKTLAA HCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCEEEECCHHHHCCCCCCHHHHH LCKLKYLVVMDPLATETSVFWQKAGEFNDVQPSEIQTQVFRLPTTLFAEEEGCIVNSGRW HHHHEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHEEECCCCCEEECCCE MQWHWKGANPPGESKPDAEILSGILMKLRELYKAEGGVLPEPIEAVNWAGYHNPHFPHGE EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCHH EVAKELNGIDLKTGKQLDSFSQLKDDGSTSCGCWIYSGSWTEAGNMMARRDNSDTSGKGI HHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCC TPGWAFSWPQNRRVLYNRASCDVNGKPWDPKRMIVEWNHGKWHGIDVGDFNMTLPPKESA CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEECCCCCCC HPFIMQPEGVGRFFSLKMLAEGPFPEHYEPMETPIGTNPLHPKVISNPAVRLLEGVEETL CCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHH GSHTEFPYVCTTYSLTEHFNFWTIHCRLAAISMPETFVELDEILAAKKGIANGDWVKVSS CCCCCCCEEEEEEEHHHCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEC KRGSLMTKALVTKRLQPLKVHGQMVHTVGLPRHGGYNGLTRRSSSCNVLTTEVGDANTQV CCCCHHHHHHHHHCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC PEFKAFLVDIAKAEGV HHHHHHHHHHHHHCCC >Mature Secondary Structure TNHWIDIKNASVVVIMGGNAAEAHPVGFGWVTEAMEHNNAKLVVVDPRFNRSAALADCY CCCEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH APLRSGTDIAFLLGLSRYLIETKQVNYEYVKAYTNASYIIREDFEFNEGLFSGFDEKSRT HHHCCCCCCHHHHHHHHHHHHHHCCCHHHEEEECCCEEEEEECCCCCCHHHCCCCHHHCC YDKDSWYYELDEDGYAKVDETYEHPRCVWNLLKNHVDRYDFETVSNITGTPVEDYEKVCA CCCCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHH LIGSTHVHDKAATFMYALGWTHHTKGAQNIRSMALVQLLLGNIGVLGGGVNALRGHSNVQ HHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCC GATDMGLLCQNLPGYLKLPNDNDTDLATYLDNYTPKPLRPGQTNYWSNYPKFFISQMKSF CCHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH WGENATAANNFGYDWLPKWDLQYDYTKHIDMMYKGQVNGYFVQGVNAINSMPNRNKTLAA HCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCEEEECCHHHHCCCCCCHHHHH LCKLKYLVVMDPLATETSVFWQKAGEFNDVQPSEIQTQVFRLPTTLFAEEEGCIVNSGRW HHHHEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHEEECCCCCEEECCCE MQWHWKGANPPGESKPDAEILSGILMKLRELYKAEGGVLPEPIEAVNWAGYHNPHFPHGE EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCHH EVAKELNGIDLKTGKQLDSFSQLKDDGSTSCGCWIYSGSWTEAGNMMARRDNSDTSGKGI HHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCC TPGWAFSWPQNRRVLYNRASCDVNGKPWDPKRMIVEWNHGKWHGIDVGDFNMTLPPKESA CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEECCCCCCC HPFIMQPEGVGRFFSLKMLAEGPFPEHYEPMETPIGTNPLHPKVISNPAVRLLEGVEETL CCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHH GSHTEFPYVCTTYSLTEHFNFWTIHCRLAAISMPETFVELDEILAAKKGIANGDWVKVSS CCCCCCCEEEEEEEHHHCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEC KRGSLMTKALVTKRLQPLKVHGQMVHTVGLPRHGGYNGLTRRSSSCNVLTTEVGDANTQV CCCCHHHHHHHHHCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC PEFKAFLVDIAKAEGV HHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1834669; 9097039; 9278503; 11884747 [H]