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The map label for this gene is rsd [H]

Identifier: 157960255

GI number: 157960255

Start: 529135

End: 529602

Strand: Reverse

Name: rsd [H]

Synonym: Spea_0426

Alternate gene names: 157960255

Gene position: 529602-529135 (Counterclockwise)

Preceding gene: 157960259

Following gene: 157960253

Centisome position: 10.23

GC content: 42.74

Gene sequence:

>468_bases
ATGCTAAGACAGTTAGAGAAAGCCGAACAAAAATGGGGCGGCTCAAATACTCTTATAGATCAATGGTTAAATAATCGGCG
CAACCTACTTATTAACTATTGCCAGATTGCCGGGATTCCGCCGTATGAGGAAACTGACAAGTCGCTCCCCGCCTTTGACT
CAGTAAAACAGTTTTGCGATCAATTAATGGATTATGTATCTGAAGGTCATTTTGAGATCTATAACCAAGTGGTAACTGCC
TGCGAAAAGAATGGCAGCACAAGCCAAGAACTCGCTCAGAAACTGGTACCGCAGATCAGTGAGACCACAGATACCGCCTT
AGACTTCAATGACAAATATACTGAAGCCGAAGATGAGCAGGTGTTATTCCACTTGGATAAAGATTTATCATCTCTAGGCC
ATGCAATGGAAACACGCTTCGAACTGGAAGATAAGCTGCTAGAAGTTCTGCATAGTAAGCACTCTTAA

Upstream 100 bases:

>100_bases
TATTTAGTATTTCCTCATAAATCGGCCAAAAATGGTTGATCAAAACTACATTTTTCCCCTACATTAGAAGTACAGAGATG
GATTCTTAACGGGGAAGATC

Downstream 100 bases:

>100_bases
AGCTAGGACGCTACGCTGCGAGGAAAGTAACAAGAAGCAAGCATGCTTCTAGCTTAGGTTCTAGGTTCTAGGTTCTAGGT
TCTAGGTTCTAGGTTCTAGC

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MLRQLEKAEQKWGGSNTLIDQWLNNRRNLLINYCQIAGIPPYEETDKSLPAFDSVKQFCDQLMDYVSEGHFEIYNQVVTA
CEKNGSTSQELAQKLVPQISETTDTALDFNDKYTEAEDEQVLFHLDKDLSSLGHAMETRFELEDKLLEVLHSKHS

Sequences:

>Translated_155_residues
MLRQLEKAEQKWGGSNTLIDQWLNNRRNLLINYCQIAGIPPYEETDKSLPAFDSVKQFCDQLMDYVSEGHFEIYNQVVTA
CEKNGSTSQELAQKLVPQISETTDTALDFNDKYTEAEDEQVLFHLDKDLSSLGHAMETRFELEDKLLEVLHSKHS
>Mature_155_residues
MLRQLEKAEQKWGGSNTLIDQWLNNRRNLLINYCQIAGIPPYEETDKSLPAFDSVKQFCDQLMDYVSEGHFEIYNQVVTA
CEKNGSTSQELAQKLVPQISETTDTALDFNDKYTEAEDEQVLFHLDKDLSSLGHAMETRFELEDKLLEVLHSKHS

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase [H]

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family [H]

Homologues:

Organism=Escherichia coli, GI1790428, Length=148, Percent_Identity=37.8378378378378, Blast_Score=101, Evalue=2e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007448 [H]

Pfam domain/function: PF04353 Rsd_AlgQ [H]

EC number: NA

Molecular weight: Translated: 17844; Mature: 17844

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRQLEKAEQKWGGSNTLIDQWLNNRRNLLINYCQIAGIPPYEETDKSLPAFDSVKQFCD
CCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
QLMDYVSEGHFEIYNQVVTACEKNGSTSQELAQKLVPQISETTDTALDFNDKYTEAEDEQ
HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
VLFHLDKDLSSLGHAMETRFELEDKLLEVLHSKHS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLRQLEKAEQKWGGSNTLIDQWLNNRRNLLINYCQIAGIPPYEETDKSLPAFDSVKQFCD
CCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
QLMDYVSEGHFEIYNQVVTACEKNGSTSQELAQKLVPQISETTDTALDFNDKYTEAEDEQ
HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
VLFHLDKDLSSLGHAMETRFELEDKLLEVLHSKHS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA