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The map label for this gene is frdC [H]

Identifier: 157960221

GI number: 157960221

Start: 473880

End: 474584

Strand: Direct

Name: frdC [H]

Synonym: Spea_0392

Alternate gene names: 157960221

Gene position: 473880-474584 (Clockwise)

Preceding gene: 157960216

Following gene: 157960222

Centisome position: 9.16

GC content: 45.39

Gene sequence:

>705_bases
ATGTTAGCATCCTACGTAAACGGTACTGGACACCCTGCATCGGCAAAAGCAGATAAAATACAAAGCATTACAGGAGTAAT
GATGGGCTGTTTCTTATTGGCTCACCTACACTTTGAATCGAGTATTTTGCTTGGAAAAGACGCTTTCTATACGGTCGTGC
AATTTTTAGAGGGCGGTATGTTTAGCTCTACTGGGCATGGCTTTCCGATTGTGACTAAAGTCTTCTCGGTGTTTATGTTA
GCGGTTGTGATGCTACATGCGGCAGTTGCCCTACGTCGTTTCCCTGCGCAGCTTGGCCAATGGCGTGCCTTAAGGCGTCA
TATGGCGGTTATCAATCACAAAGACAGCCAAGCTTGGTTTTGGCAGTTGGTCACCGGCTTCGTGCTGTTTTTCTTAGTGC
CTGTTCACTTGTTTACCATGATAGCTAATCCTGAAATTGGTCCTAACTTATCGGCTGAGCGTGTTTATCACCAAAACGCT
TGGTTGTTGTACGCTCTATTACTACCAGCCGTGGTAATCCACGCCATGATAGGCCTATATCGCGTCGCTGTTAAATGGGG
ATTCACCGAAAAGCGTACGGGTTTACGTAAGCTTGCCAAGGTATTGATCATTTATCTGATAGTTATCGGACTACTGAGCC
TTGGATCTTATATGTTAATTGGTAGTGAGCTTACTCTGCCTGTTGAGGCGTATCGACCAAGTTAA

Upstream 100 bases:

>100_bases
GAGTTCCTTCACGAAAAAAATCTCTGTATCAATTTGCTGACAAAGTTCTTGTTAGAGTGTAAATCCCACTATTAGGCATA
AGATAAACAAGACAAGAATA

Downstream 100 bases:

>100_bases
GCCTTGGCTTGAGTATAAGAATTGCAAGCGAAATAACTTAATTAATATTCACTAAACTAATCGCGTATTTGTTGATCTAT
CTCACGGTTAAATGCCTGTT

Product: fumarate reductase cytochrome b-556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MLASYVNGTGHPASAKADKIQSITGVMMGCFLLAHLHFESSILLGKDAFYTVVQFLEGGMFSSTGHGFPIVTKVFSVFML
AVVMLHAAVALRRFPAQLGQWRALRRHMAVINHKDSQAWFWQLVTGFVLFFLVPVHLFTMIANPEIGPNLSAERVYHQNA
WLLYALLLPAVVIHAMIGLYRVAVKWGFTEKRTGLRKLAKVLIIYLIVIGLLSLGSYMLIGSELTLPVEAYRPS

Sequences:

>Translated_234_residues
MLASYVNGTGHPASAKADKIQSITGVMMGCFLLAHLHFESSILLGKDAFYTVVQFLEGGMFSSTGHGFPIVTKVFSVFML
AVVMLHAAVALRRFPAQLGQWRALRRHMAVINHKDSQAWFWQLVTGFVLFFLVPVHLFTMIANPEIGPNLSAERVYHQNA
WLLYALLLPAVVIHAMIGLYRVAVKWGFTEKRTGLRKLAKVLIIYLIVIGLLSLGSYMLIGSELTLPVEAYRPS
>Mature_234_residues
MLASYVNGTGHPASAKADKIQSITGVMMGCFLLAHLHFESSILLGKDAFYTVVQFLEGGMFSSTGHGFPIVTKVFSVFML
AVVMLHAAVALRRFPAQLGQWRALRRHMAVINHKDSQAWFWQLVTGFVLFFLVPVHLFTMIANPEIGPNLSAERVYHQNA
WLLYALLLPAVVIHAMIGLYRVAVKWGFTEKRTGLRKLAKVLIIYLIVIGLLSLGSYMLIGSELTLPVEAYRPS

Specific function: Di-heme cytochrome of the fumarate reductase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004224
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 26045; Mature: 26045

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLASYVNGTGHPASAKADKIQSITGVMMGCFLLAHLHFESSILLGKDAFYTVVQFLEGGM
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHCCC
FSSTGHGFPIVTKVFSVFMLAVVMLHAAVALRRFPAQLGQWRALRRHMAVINHKDSQAWF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
WQLVTGFVLFFLVPVHLFTMIANPEIGPNLSAERVYHQNAWLLYALLLPAVVIHAMIGLY
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVAVKWGFTEKRTGLRKLAKVLIIYLIVIGLLSLGSYMLIGSELTLPVEAYRPS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHCCCCC
>Mature Secondary Structure
MLASYVNGTGHPASAKADKIQSITGVMMGCFLLAHLHFESSILLGKDAFYTVVQFLEGGM
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHCCC
FSSTGHGFPIVTKVFSVFMLAVVMLHAAVALRRFPAQLGQWRALRRHMAVINHKDSQAWF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
WQLVTGFVLFFLVPVHLFTMIANPEIGPNLSAERVYHQNAWLLYALLLPAVVIHAMIGLY
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVAVKWGFTEKRTGLRKLAKVLIIYLIVIGLLSLGSYMLIGSELTLPVEAYRPS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]