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The map label for this gene is ydiU [C]

Identifier: 157960137

GI number: 157960137

Start: 346748

End: 348199

Strand: Direct

Name: ydiU [C]

Synonym: Spea_0308

Alternate gene names: 157960137

Gene position: 346748-348199 (Clockwise)

Preceding gene: 157960136

Following gene: 157960138

Centisome position: 6.7

GC content: 49.24

Gene sequence:

>1452_bases
ATGCGATTAAAACAAGACTTTTTTGAACAGCTTCCCGAATTCTATTCGCAAGTCTTTCCATTAGGCATTAGCAATCCCCA
CTGGCTGGCTTGGAGCCAAGATGCGGCGGATCTCATCGAGATAAAACAGCCCAGTGATGAGCTACTACAGGGGCTTTCAG
GCAATGCACATGTCGATGGCGCAAGTTATTATGCACAGGTCTACAGCGGCCACCAGTTTGGTGGTTACTCTCCTCAACTT
GGCGATGGTCGCTCGATTATTCTGGGCGAGGCTTTAGGCCCGCAAGGAGCCTGGGATGTGGCGCTAAAAGGTGCTGGTCC
CACACCATATTCGCGCCATGGTGATGGCCGCGCAGTGATGCGCTCAGCCGTGCGGGAGTTTTTAATTTCAGAAGCCTTGC
ATCACCTGCATATTCCCACTACCCGAGCATTAGCGGTTATTGGATCAGACCTGCCCGTATGGCGTGAATCCCAAGAAACT
GCGGCGATAACGGTGCGGTTAGCCAAGAGCCATATTCGTTTCGGCCACTTTGAGTATTTTTGCCACAGCGAGCGAGGGGC
ACCGGCAAAGCTGAAGCAATTACTGGATTTCACCATCAAGCAGCACTATCCAGATTTAAGTTGCGATGCGGTGGGTTACA
AGGCTTGGTTTACTCGCGTGGTTGCCGATACTGCTAAGATGATTGCTAACTGGCAGGCGATAGGCTTTGCCCACGGAGTG
ATGAACACAGATAATATGTCGATTCTGGGTGACACATTCGATTTCGGTCCATTTGCCTTTTTAGATACCTTCAAGGAAGG
CTTTATCTGTAATCATTCCGATCCTGAGGGGCGTTACGCTTTTGGCCAGCAGCCGGGAATTGGTCTTTGGAACTTACAAC
GTTTAGCCCAGGCGCTATCGCCCATCATAGCTTCAGACGACTTGATTGAGTCGCTGAATCAATATCAAGTAGAGCTAGTT
AAGCACTATCTACTGCTGATGCGCGGCAAGTTGGGGTTAAAGACTTCTGCTGCGGAAGCCGAACAAGACGACCATGATTT
AGCACTGATTGGCGCCTTTACTGGCTTAATGGAGCGAAATCAGTTGGATCACACTAATACTTGGCGTCGATTCGGTCAGC
TAGACCCCAACGCTAGTCACTCCTCTTTGCGGGATGATTTTGTCGATCTTCATGGTTTCGATACTTGGTATCAGGCATAC
CAGGTTCGACTCGGAAGCGTTGACGAAGTTGGCCTGTGGCAGAAAGAGCGTAACCAAGTAAATCCTAAATATATTTTGCG
TAATTACCTTGCTCAAGAGGCAATAATTGCTGTCGAGCTGGGCGATCTTAAGCCGCTGCATAATCTACAGCGCTTATTGC
AGAACCCATTTGATGAGCAGTTAGAATTTGAAGACATGGCCAAGCGACCACCGGATTGGGGCCAAGGCTTAATCATGTCA
TGCAGTAGCTAA

Upstream 100 bases:

>100_bases
AACTGCCAGAGCACGATTGCTTCAGGAGACTAATCATTAAATATGCGTTGTCTTAACCGAAAAGTCTCTGCCGAAATTTA
AAGCCATGTAGGTATGCCGT

Downstream 100 bases:

>100_bases
TGGCAATTGATATAAGAATAATGAGGCAGTAATGAAATTAACGGCAATTAAGCTAGATAGAGACACGTTAAGCCTATCGA
TACAGGCCGATATCGATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 483

Protein sequence:

>483_residues
MRLKQDFFEQLPEFYSQVFPLGISNPHWLAWSQDAADLIEIKQPSDELLQGLSGNAHVDGASYYAQVYSGHQFGGYSPQL
GDGRSIILGEALGPQGAWDVALKGAGPTPYSRHGDGRAVMRSAVREFLISEALHHLHIPTTRALAVIGSDLPVWRESQET
AAITVRLAKSHIRFGHFEYFCHSERGAPAKLKQLLDFTIKQHYPDLSCDAVGYKAWFTRVVADTAKMIANWQAIGFAHGV
MNTDNMSILGDTFDFGPFAFLDTFKEGFICNHSDPEGRYAFGQQPGIGLWNLQRLAQALSPIIASDDLIESLNQYQVELV
KHYLLLMRGKLGLKTSAAEAEQDDHDLALIGAFTGLMERNQLDHTNTWRRFGQLDPNASHSSLRDDFVDLHGFDTWYQAY
QVRLGSVDEVGLWQKERNQVNPKYILRNYLAQEAIIAVELGDLKPLHNLQRLLQNPFDEQLEFEDMAKRPPDWGQGLIMS
CSS

Sequences:

>Translated_483_residues
MRLKQDFFEQLPEFYSQVFPLGISNPHWLAWSQDAADLIEIKQPSDELLQGLSGNAHVDGASYYAQVYSGHQFGGYSPQL
GDGRSIILGEALGPQGAWDVALKGAGPTPYSRHGDGRAVMRSAVREFLISEALHHLHIPTTRALAVIGSDLPVWRESQET
AAITVRLAKSHIRFGHFEYFCHSERGAPAKLKQLLDFTIKQHYPDLSCDAVGYKAWFTRVVADTAKMIANWQAIGFAHGV
MNTDNMSILGDTFDFGPFAFLDTFKEGFICNHSDPEGRYAFGQQPGIGLWNLQRLAQALSPIIASDDLIESLNQYQVELV
KHYLLLMRGKLGLKTSAAEAEQDDHDLALIGAFTGLMERNQLDHTNTWRRFGQLDPNASHSSLRDDFVDLHGFDTWYQAY
QVRLGSVDEVGLWQKERNQVNPKYILRNYLAQEAIIAVELGDLKPLHNLQRLLQNPFDEQLEFEDMAKRPPDWGQGLIMS
CSS
>Mature_483_residues
MRLKQDFFEQLPEFYSQVFPLGISNPHWLAWSQDAADLIEIKQPSDELLQGLSGNAHVDGASYYAQVYSGHQFGGYSPQL
GDGRSIILGEALGPQGAWDVALKGAGPTPYSRHGDGRAVMRSAVREFLISEALHHLHIPTTRALAVIGSDLPVWRESQET
AAITVRLAKSHIRFGHFEYFCHSERGAPAKLKQLLDFTIKQHYPDLSCDAVGYKAWFTRVVADTAKMIANWQAIGFAHGV
MNTDNMSILGDTFDFGPFAFLDTFKEGFICNHSDPEGRYAFGQQPGIGLWNLQRLAQALSPIIASDDLIESLNQYQVELV
KHYLLLMRGKLGLKTSAAEAEQDDHDLALIGAFTGLMERNQLDHTNTWRRFGQLDPNASHSSLRDDFVDLHGFDTWYQAY
QVRLGSVDEVGLWQKERNQVNPKYILRNYLAQEAIIAVELGDLKPLHNLQRLLQNPFDEQLEFEDMAKRPPDWGQGLIMS
CSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=383, Percent_Identity=41.5143603133159, Blast_Score=266, Evalue=4e-71,
Organism=Escherichia coli, GI1787999, Length=483, Percent_Identity=49.4824016563147, Blast_Score=437, Evalue=1e-124,
Organism=Saccharomyces cerevisiae, GI6325034, Length=408, Percent_Identity=35.5392156862745, Blast_Score=202, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y308_SHEPA (A8GZ99)

Other databases:

- EMBL:   CP000851
- RefSeq:   YP_001500171.1
- STRING:   A8GZ99
- GeneID:   5660708
- GenomeReviews:   CP000851_GR
- KEGG:   spl:Spea_0308
- NMPDR:   fig|398579.3.peg.274
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   THIRFGH
- ProtClustDB:   CLSK905697
- BioCyc:   SPEA398579:SPEA_0308-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 54277; Mature: 54277

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKQDFFEQLPEFYSQVFPLGISNPHWLAWSQDAADLIEIKQPSDELLQGLSGNAHVDG
CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHCCCCHHHHHHCCCCCCCCCH
ASYYAQVYSGHQFGGYSPQLGDGRSIILGEALGPQGAWDVALKGAGPTPYSRHGDGRAVM
HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHH
RSAVREFLISEALHHLHIPTTRALAVIGSDLPVWRESQETAAITVRLAKSHIRFGHFEYF
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHCCCCEEEE
CHSERGAPAKLKQLLDFTIKQHYPDLSCDAVGYKAWFTRVVADTAKMIANWQAIGFAHGV
EECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MNTDNMSILGDTFDFGPFAFLDTFKEGFICNHSDPEGRYAFGQQPGIGLWNLQRLAQALS
CCCCCCEEECCCCCCCHHHHHHHHHCCEEECCCCCCCCEECCCCCCCCHHHHHHHHHHHH
PIIASDDLIESLNQYQVELVKHYLLLMRGKLGLKTSAAEAEQDDHDLALIGAFTGLMERN
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCEEHHHHHHHHHHHC
QLDHTNTWRRFGQLDPNASHSSLRDDFVDLHGFDTWYQAYQVRLGSVDEVGLWQKERNQV
CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHCCC
NPKYILRNYLAQEAIIAVELGDLKPLHNLQRLLQNPFDEQLEFEDMAKRPPDWGQGLIMS
CHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHCCCCHHCCHHHHHCCCCCCCCCEEEE
CSS
CCC
>Mature Secondary Structure
MRLKQDFFEQLPEFYSQVFPLGISNPHWLAWSQDAADLIEIKQPSDELLQGLSGNAHVDG
CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHCCCCHHHHHHCCCCCCCCCH
ASYYAQVYSGHQFGGYSPQLGDGRSIILGEALGPQGAWDVALKGAGPTPYSRHGDGRAVM
HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHH
RSAVREFLISEALHHLHIPTTRALAVIGSDLPVWRESQETAAITVRLAKSHIRFGHFEYF
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHCCCCEEEE
CHSERGAPAKLKQLLDFTIKQHYPDLSCDAVGYKAWFTRVVADTAKMIANWQAIGFAHGV
EECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MNTDNMSILGDTFDFGPFAFLDTFKEGFICNHSDPEGRYAFGQQPGIGLWNLQRLAQALS
CCCCCCEEECCCCCCCHHHHHHHHHCCEEECCCCCCCCEECCCCCCCCHHHHHHHHHHHH
PIIASDDLIESLNQYQVELVKHYLLLMRGKLGLKTSAAEAEQDDHDLALIGAFTGLMERN
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCEEHHHHHHHHHHHC
QLDHTNTWRRFGQLDPNASHSSLRDDFVDLHGFDTWYQAYQVRLGSVDEVGLWQKERNQV
CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHCCC
NPKYILRNYLAQEAIIAVELGDLKPLHNLQRLLQNPFDEQLEFEDMAKRPPDWGQGLIMS
CHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHCCCCHHCCHHHHHCCCCCCCCCEEEE
CSS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA