| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157960123
Identifier: 157960123
GI number: 157960123
Start: 329048
End: 330052
Strand: Reverse
Name: 157960123
Synonym: Spea_0294
Alternate gene names: NA
Gene position: 330052-329048 (Counterclockwise)
Preceding gene: 157960124
Following gene: 157960122
Centisome position: 6.38
GC content: 47.86
Gene sequence:
>1005_bases ATGAGCTATAAATTTAGACTCTTAGCCACACTGCTTCTATTCACCATTTCAGCGGGTAAAAACACTTGGGCGAATGCACT GGAGCTCGATCTACAACCTTTTCATAAAGGCAACTACCTACTCGCCAAAGCACGTTACACTCAAGCTGCAACCCACTGGA ACCAACTCAGCATTATGCTACTGAGTAATGCTAAAAAGCTACCGCAACAGACAATGTGGCAATCGGCGGGCCTAGCCGCA TCTTTAGCGGCCATTGCCGCAGATAAAGCCAATGATCCCATCGCATATCAATACTGGGCAGACAGCACCCGCTACCTATT AACGGGGGGAACAAACTGGTCGCAAATGCAACAGCTATTACATCAACGCTTAGAGACTGCCAACACCCAACTGTCGGTAG CCATGCAGGTGAGTGACATTAGCTCAGGTTTAGATGCCACACTGGACTTGGAGTTGAGCGTATTGCAGGTATGGGATGAT AAACTCGGCTTATTTCAATTTTCCTCACCGAAACTTGGCCTCAGTCGTCATCAACAAGCTCCCGTGACACTAGCGCCAAC GATTAATCCCACCCCATTATCAGCAGAGTCGTCAGGGTTGGAGCAAGGGCAGAAAAAGCTATCGGGTATACAGACTAATG TGTCACAAACGCCATCGTTTACTCCAACGCCCATTACCAAAACGTCAACAGTGCCCAAAACAGCGAAAACAATTGACTCA CCAGAAGCGAATATTGCAGCCGCGCAACAAGCTGTTGTACAGCCGAAAATACCCGCTGACAATCCGATGGCAAAAGGTAA TCTAGCAACTGGACAAAACCCAAGGGTCAGGGTCAGGGTCAGTGCCAAACAAAAACGCCAAATACAGCCAGTGCCCACAA CTCCCACCGAGGCACCAGTAAACAAATCAGCTATACCTACAACCGAACCAACACCAATGATGCAACCTGCAAGCAAACCT TTCTCATCAAGCATTTCAGAGATCGACAACAGCCTAAATGACTAA
Upstream 100 bases:
>100_bases AATGGCAAGCTTTATCAAGCGAAGAACAACAAAGAATATCGCGATGTACGCTTCAACTCACGCTTTAATCATCCAGGGAA ATGCCTAGTGGAGACTTTCG
Downstream 100 bases:
>100_bases CCGCAGAAATCATCACACGCGATATCGTCGCCCTCACGTTAAATCGGATGTTGCATGCTAAACATAGCGATTGAAGTAAC TAAGAAACTTGCCGTTTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MSYKFRLLATLLLFTISAGKNTWANALELDLQPFHKGNYLLAKARYTQAATHWNQLSIMLLSNAKKLPQQTMWQSAGLAA SLAAIAADKANDPIAYQYWADSTRYLLTGGTNWSQMQQLLHQRLETANTQLSVAMQVSDISSGLDATLDLELSVLQVWDD KLGLFQFSSPKLGLSRHQQAPVTLAPTINPTPLSAESSGLEQGQKKLSGIQTNVSQTPSFTPTPITKTSTVPKTAKTIDS PEANIAAAQQAVVQPKIPADNPMAKGNLATGQNPRVRVRVSAKQKRQIQPVPTTPTEAPVNKSAIPTTEPTPMMQPASKP FSSSISEIDNSLND
Sequences:
>Translated_334_residues MSYKFRLLATLLLFTISAGKNTWANALELDLQPFHKGNYLLAKARYTQAATHWNQLSIMLLSNAKKLPQQTMWQSAGLAA SLAAIAADKANDPIAYQYWADSTRYLLTGGTNWSQMQQLLHQRLETANTQLSVAMQVSDISSGLDATLDLELSVLQVWDD KLGLFQFSSPKLGLSRHQQAPVTLAPTINPTPLSAESSGLEQGQKKLSGIQTNVSQTPSFTPTPITKTSTVPKTAKTIDS PEANIAAAQQAVVQPKIPADNPMAKGNLATGQNPRVRVRVSAKQKRQIQPVPTTPTEAPVNKSAIPTTEPTPMMQPASKP FSSSISEIDNSLND >Mature_333_residues SYKFRLLATLLLFTISAGKNTWANALELDLQPFHKGNYLLAKARYTQAATHWNQLSIMLLSNAKKLPQQTMWQSAGLAAS LAAIAADKANDPIAYQYWADSTRYLLTGGTNWSQMQQLLHQRLETANTQLSVAMQVSDISSGLDATLDLELSVLQVWDDK LGLFQFSSPKLGLSRHQQAPVTLAPTINPTPLSAESSGLEQGQKKLSGIQTNVSQTPSFTPTPITKTSTVPKTAKTIDSP EANIAAAQQAVVQPKIPADNPMAKGNLATGQNPRVRVRVSAKQKRQIQPVPTTPTEAPVNKSAIPTTEPTPMMQPASKPF SSSISEIDNSLND
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36187; Mature: 36055
Theoretical pI: Translated: 10.07; Mature: 10.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYKFRLLATLLLFTISAGKNTWANALELDLQPFHKGNYLLAKARYTQAATHWNQLSIML CCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEEHHHHHHHHHHHEEEEE LSNAKKLPQQTMWQSAGLAASLAAIAADKANDPIAYQYWADSTRYLLTGGTNWSQMQQLL ECCCHHCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHH HQRLETANTQLSVAMQVSDISSGLDATLDLELSVLQVWDDKLGLFQFSSPKLGLSRHQQA HHHHHHCCCEEEEEEEEEHHCCCCCEEEEEEEEEEEHHCCCCCEEEECCCCCCCCCCCCC PVTLAPTINPTPLSAESSGLEQGQKKLSGIQTNVSQTPSFTPTPITKTSTVPKTAKTIDS CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCC PEANIAAAQQAVVQPKIPADNPMAKGNLATGQNPRVRVRVSAKQKRQIQPVPTTPTEAPV CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC NKSAIPTTEPTPMMQPASKPFSSSISEIDNSLND CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure SYKFRLLATLLLFTISAGKNTWANALELDLQPFHKGNYLLAKARYTQAATHWNQLSIML CCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEEHHHHHHHHHHHEEEEE LSNAKKLPQQTMWQSAGLAASLAAIAADKANDPIAYQYWADSTRYLLTGGTNWSQMQQLL ECCCHHCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHH HQRLETANTQLSVAMQVSDISSGLDATLDLELSVLQVWDDKLGLFQFSSPKLGLSRHQQA HHHHHHCCCEEEEEEEEEHHCCCCCEEEEEEEEEEEHHCCCCCEEEECCCCCCCCCCCCC PVTLAPTINPTPLSAESSGLEQGQKKLSGIQTNVSQTPSFTPTPITKTSTVPKTAKTIDS CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCC PEANIAAAQQAVVQPKIPADNPMAKGNLATGQNPRVRVRVSAKQKRQIQPVPTTPTEAPV CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC NKSAIPTTEPTPMMQPASKPFSSSISEIDNSLND CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA