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The map label for this gene is hslR [H]

Identifier: 157959972

GI number: 157959972

Start: 158117

End: 158515

Strand: Reverse

Name: hslR [H]

Synonym: Spea_0142

Alternate gene names: 157959972

Gene position: 158515-158117 (Counterclockwise)

Preceding gene: 157959985

Following gene: 157959971

Centisome position: 3.06

GC content: 44.36

Gene sequence:

>399_bases
ATGCATAATAACGAGCAACAAGCCATTCAAGTCAGGCTTGATAAATGGCTCTGGGCTGCGCGCTTTTATAAGACGCGAGC
CATCGCAAAAGAGATGATTAATGGTGGTAAAGTACACTATAACGGCCAGCGTACAAAATCGAGCAAATATGCCGAGGTTG
GTGCCACCATTAGATTAAGACAGGGCTATGACGAAAAAGAGCTCGTCATCAAAGAGCTGTCAGAATACCGACAAAAAGGG
TCGATAGCACAAACCCTTTATGAAGAGACACCGCAAAGTATAGCCAAACGTGAGACCTATGCCGAGCAACGACGTCTGAA
TATTCTTAATAATCCCGCTCCCGATCATAAGCCGGATAAGAAACAACGTCGACAAATAATGCGCTTTAAAGAAAGCTAG

Upstream 100 bases:

>100_bases
TATTTTATCAGCGAGAAAGTAAAGATTTGTATATTACTGCTGAGCATGTGAACTTCGCCCAGCAATTTAATTTAAATTAA
TCTAATCACTGGAGTCGCTC

Downstream 100 bases:

>100_bases
AAATTGGAAACCCGAAATGAACGAACAGATGACTAAAGACAATCTATATCGCTATTTATTCGAAAACGCGAGTGTACGTG
GCGAATTAGTACAGTTAGAA

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MHNNEQQAIQVRLDKWLWAARFYKTRAIAKEMINGGKVHYNGQRTKSSKYAEVGATIRLRQGYDEKELVIKELSEYRQKG
SIAQTLYEETPQSIAKRETYAEQRRLNILNNPAPDHKPDKKQRRQIMRFKES

Sequences:

>Translated_132_residues
MHNNEQQAIQVRLDKWLWAARFYKTRAIAKEMINGGKVHYNGQRTKSSKYAEVGATIRLRQGYDEKELVIKELSEYRQKG
SIAQTLYEETPQSIAKRETYAEQRRLNILNNPAPDHKPDKKQRRQIMRFKES
>Mature_132_residues
MHNNEQQAIQVRLDKWLWAARFYKTRAIAKEMINGGKVHYNGQRTKSSKYAEVGATIRLRQGYDEKELVIKELSEYRQKG
SIAQTLYEETPQSIAKRETYAEQRRLNILNNPAPDHKPDKKQRRQIMRFKES

Specific function: Involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=126, Percent_Identity=60.3174603174603, Blast_Score=165, Evalue=9e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 15637; Mature: 15637

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNNEQQAIQVRLDKWLWAARFYKTRAIAKEMINGGKVHYNGQRTKSSKYAEVGATIRLR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHCCEEEEC
QGYDEKELVIKELSEYRQKGSIAQTLYEETPQSIAKRETYAEQRRLNILNNPAPDHKPDK
CCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
KQRRQIMRFKES
HHHHHHHHHCCC
>Mature Secondary Structure
MHNNEQQAIQVRLDKWLWAARFYKTRAIAKEMINGGKVHYNGQRTKSSKYAEVGATIRLR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHCCEEEEC
QGYDEKELVIKELSEYRQKGSIAQTLYEETPQSIAKRETYAEQRRLNILNNPAPDHKPDK
CCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
KQRRQIMRFKES
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]