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The map label for this gene is 157959952

Identifier: 157959952

GI number: 157959952

Start: 134632

End: 135111

Strand: Direct

Name: 157959952

Synonym: Spea_0122

Alternate gene names: NA

Gene position: 134632-135111 (Clockwise)

Preceding gene: 157959951

Following gene: 157959953

Centisome position: 2.6

GC content: 44.38

Gene sequence:

>480_bases
ATGGATAGAGAACTATTACAGAGTTTGTATCGATACTGTATTTGCCTCACAGGTCATAGCGCTCAAGCAGAGGATTTGCT
GCAAACGGCGGTAGAGAATTGGCTAAAGGGTTGTAGTCGACCGGTTCAATTAAAAGCTTACCTTAGAAAGGTGATTCGTA
ATCAGTTTATCGATGACTGCCGTAGACTCAAATTGGTGGACTTTGAACCGCTCGATGACAATGCTCCCGTGCTACTCGAT
GAAACATGCCTAGAAGAAATTGAGATACAGCACAACCTCATAGAACATCTATTTGAGTTACTTAATCCAGCGGAGCGAGA
GGTGCTATACCTTTGGGCCATAGAAGGTTATAGCGCAGCTGAGATAGCAGAAGATCTACAGCAACCCCGTGGCACTATTT
TGTCTCGTTTACACCGTATTAAACTTAAAACAGCCGATCTTGCACTCGGTGATTCGGCGCAAACTATCGGAGGGCAATAA

Upstream 100 bases:

>100_bases
AAATTACCAATCCGGCCCAAGATCTTAGTCTCTTGAGTGAGTTGATCGAGCGCCAGTGGATCTGTGGTTTTAGGTTAGCG
GTTGAGACTGGGTAATCTGT

Downstream 100 bases:

>100_bases
AGATGACTAAGAAGAAAGGTGCCACCGATATGAGCTTTAAGGCCTTAGTTAAGCAGCATATAGAAGCGCAAGCTATGAGT
GAGCAGGGGCTGGCTAGAAT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor Sigma-70 Family; Sigma-; ECF Sigma Factor PrtI; RpoE6 RNA Polymerase Sigma Factor; ECF SubfamilyRNA Polymerase Sigma-70 Factor

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MDRELLQSLYRYCICLTGHSAQAEDLLQTAVENWLKGCSRPVQLKAYLRKVIRNQFIDDCRRLKLVDFEPLDDNAPVLLD
ETCLEEIEIQHNLIEHLFELLNPAEREVLYLWAIEGYSAAEIAEDLQQPRGTILSRLHRIKLKTADLALGDSAQTIGGQ

Sequences:

>Translated_159_residues
MDRELLQSLYRYCICLTGHSAQAEDLLQTAVENWLKGCSRPVQLKAYLRKVIRNQFIDDCRRLKLVDFEPLDDNAPVLLD
ETCLEEIEIQHNLIEHLFELLNPAEREVLYLWAIEGYSAAEIAEDLQQPRGTILSRLHRIKLKTADLALGDSAQTIGGQ
>Mature_159_residues
MDRELLQSLYRYCICLTGHSAQAEDLLQTAVENWLKGCSRPVQLKAYLRKVIRNQFIDDCRRLKLVDFEPLDDNAPVLLD
ETCLEEIEIQHNLIEHLFELLNPAEREVLYLWAIEGYSAAEIAEDLQQPRGTILSRLHRIKLKTADLALGDSAQTIGGQ

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18218; Mature: 18218

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRELLQSLYRYCICLTGHSAQAEDLLQTAVENWLKGCSRPVQLKAYLRKVIRNQFIDDC
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RRLKLVDFEPLDDNAPVLLDETCLEEIEIQHNLIEHLFELLNPAEREVLYLWAIEGYSAA
HHCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEEECCCCHH
EIAEDLQQPRGTILSRLHRIKLKTADLALGDSAQTIGGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MDRELLQSLYRYCICLTGHSAQAEDLLQTAVENWLKGCSRPVQLKAYLRKVIRNQFIDDC
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RRLKLVDFEPLDDNAPVLLDETCLEEIEIQHNLIEHLFELLNPAEREVLYLWAIEGYSAA
HHCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEEECCCCHH
EIAEDLQQPRGTILSRLHRIKLKTADLALGDSAQTIGGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA