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The map label for this gene is fliN [H]

Identifier: 157959918

GI number: 157959918

Start: 98279

End: 98635

Strand: Direct

Name: fliN [H]

Synonym: Spea_0088

Alternate gene names: 157959918

Gene position: 98279-98635 (Clockwise)

Preceding gene: 157959917

Following gene: 157959919

Centisome position: 1.9

GC content: 43.7

Gene sequence:

>357_bases
ATGGCTGAACATAACATTTTACAAGATGAAGATTTTTTATTGGATGATGAGTTTTTTACCGAAGAGGAGAGTCATCAGTC
AAAATCTCAAGCTAAGCCTGTTAAAGATATGTCTTTTTTCCATCAACTACCTGTACAGGTGACCTTAGAATTAGCCAGTG
CTGAGATGTCATTAGGGGAGCTGACGAAAATGGGTGAGGGCGATGTTGTTGCGCTCGATCGTATGGTGGGTGAGCCTTTA
GACATTCGAGTCAATGGCGCCTTACTCGGTAGAGGTGAAGTGGTTGAGGTTAATGGCCGCTATGGTGTGCGCTTACTTGA
AGTGGAAGCTATCAGTCTAACAGGAGCAAATGACTGA

Upstream 100 bases:

>100_bases
GTCGGTAAACGTCCACTTTTTTATGCCACGGTTCATACCCATGAGGGGCAAATGGTGGCGAAACTGACCCAAGAAGCTTT
TTACATGGAGGAGCAATCCA

Downstream 100 bases:

>100_bases
TTATGTGGCGAGTTTTGCTGATTTTACTCTTAGGCTTCTCATCGACGGCATATGCCAATGATGGCTTAACATTATTCACG
TTAAATGATGGTGCAGAGTC

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MAEHNILQDEDFLLDDEFFTEEESHQSKSQAKPVKDMSFFHQLPVQVTLELASAEMSLGELTKMGEGDVVALDRMVGEPL
DIRVNGALLGRGEVVEVNGRYGVRLLEVEAISLTGAND

Sequences:

>Translated_118_residues
MAEHNILQDEDFLLDDEFFTEEESHQSKSQAKPVKDMSFFHQLPVQVTLELASAEMSLGELTKMGEGDVVALDRMVGEPL
DIRVNGALLGRGEVVEVNGRYGVRLLEVEAISLTGAND
>Mature_117_residues
AEHNILQDEDFLLDDEFFTEEESHQSKSQAKPVKDMSFFHQLPVQVTLELASAEMSLGELTKMGEGDVVALDRMVGEPLD
IRVNGALLGRGEVVEVNGRYGVRLLEVEAISLTGAND

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=121, Percent_Identity=37.1900826446281, Blast_Score=81, Evalue=2e-17,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 13019; Mature: 12888

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEHNILQDEDFLLDDEFFTEEESHQSKSQAKPVKDMSFFHQLPVQVTLELASAEMSLGE
CCCCCCCCCCCCEECCCCCCCCHHHCCHHHCCCCHHHHHHHHCCEEEEEEECCCCCCHHH
LTKMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGRYGVRLLEVEAISLTGAND
HHCCCCCCEEEEHHHHCCCEEEEECCEEECCCCEEEECCCCCEEEEEEEEEEEECCCC
>Mature Secondary Structure 
AEHNILQDEDFLLDDEFFTEEESHQSKSQAKPVKDMSFFHQLPVQVTLELASAEMSLGE
CCCCCCCCCCCEECCCCCCCCHHHCCHHHCCCCHHHHHHHHCCEEEEEEECCCCCCHHH
LTKMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGRYGVRLLEVEAISLTGAND
HHCCCCCCEEEEHHHHCCCEEEEECCEEECCCCEEEECCCCCEEEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2651416; 9097040; 9278503 [H]