| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is fliF [H]
Identifier: 157959913
GI number: 157959913
Start: 92510
End: 94210
Strand: Reverse
Name: fliF [H]
Synonym: Spea_0083
Alternate gene names: 157959913
Gene position: 94210-92510 (Counterclockwise)
Preceding gene: 157959914
Following gene: 157959912
Centisome position: 1.82
GC content: 48.44
Gene sequence:
>1701_bases ATGTCAACTACATTGACTCAAACCAGCCCTGCCGCAACGAATGCTGGTGTCAATAACCCGCTGAATTCACTGAAAGAAAA GTGGCAACAATATAATCGAGGCGACCGTCAGGTAGTGATATTAGCCGTACTCGCTATTGTTGCCGCTTGCGTCATTGTGT TGATGCTATGGAGTGCGAGTCAAGGCTACCGTCCCCTATATGGTAACCAAGAAGGCGTTGAAACTTCACAAATTATCGAG GTACTTGAAGCGGAAGGTATTAGTTATCGTATCGACGCGAACAGCGGGCTGATCTTGGTTACCGAAGATAAGCTCGGCCC TGCCCGCATGCTACTGGCAGCCCGTGGCGTTAAGGCTAAGGTGCCATCAGGAATGGAGTCGCTCGAAAACTCTAACATAG GCACCAGCCAGTTTATGGAACAGGCCAAGTATCGCTATAGCCTAGAGGGTGAGCTATCACGCACCATTATGGCATTGAAG GCGGTTAAGACCGCTCGAGTCCATTTGGCCATCCCTAAGAAAACCCTATTTATTCGTCAACAGCCTGAGTTACCTACAGC CTCAGTGATGCTTGAGCTCTATGCCGGTAGCAATATTCAACCGGAACAGATTGAGTCTATCGTCAACTTAGTGGCTGGTA GCGTTACCGGTATGACTCCCGATCGTGTGCAAGTTGTCGATCAAGAAGGTAACCACTTAAGCTCATCTATTAGCGTTAAT AAAGATATCACTCAGGCACGAGACCGCCAGCTCAAATACACCCAAGAGTTAGAGCAAAGCTTAATTGATCGCGCCTCAAG CATGCTGCTGCCTATTCTCGGACGCGATCACTTTGAAGTACAAGTCGCTGCAAACGTGAACTTTAACCAAGTGGAAGAGA CCAAAGAATCTCTAGACCCACTGGCAGTCGTCACCAAAGAGAATCTAACCAGTAATGAAACCAATAGCGATATGGCCCTG GGTATTCCTGGTGCTTTAAGCAATCAACCACCAGCCGCTGAAGCAGATGAGAGTAACGCCCGTCGTAACTTAAACTCACA GGAAAGCCGTCAATTCGACACCGGCCGCTCAGTCAGACACACCCGCTATCAACAGATGCAGTTAGAAAATCTATCGGTAT CGGTACTGATTAATAAACAATCCGCCGGAGAGACGGGCTGGACTCAGACTCAACTAGACCAATTAAGCAGCATGGTACAG GACGCGATTGGCTTCTCTGCCGCTCGAGGCGATCAATTCAGTATTAACAGCTTTGATTTTGCACCAACCCAAATTGCTGA ATTTGAACCTATGCCATGGTGGCAGGGTGAAAGTTATCAAACCTACTTACGCTACTTTATCGGCGCGCTATTAGGCCTTG CAATGATATTTTTCGTCTTGCGCCCTCTGGTTAAGCATCTGACCAAAACGGTTGAGCATAACTTAAAAAGCATTGATGAG CCTGCGCAGCCAAGCTTGCCACCAGCACAAGCGACCGTTACCAAACTGGAAGGCGGTAATAATGCACAAGCAATCGCAGA TCAGTTGATAGGGCAAAACCAGAAGACTGGCGACCTTAACTGGAGCGGCGATGCTAGCCTTCCAGAACCAAGCTCACCTT TAGCGGTCAAGATGGAGCACCTCAGTTTACTCGCTAACCAAGAGCCTGCACGCGTAGCTGAAGTGATAGCCCACTGGATT GGCGATACTGAGCATGATTAA
Upstream 100 bases:
>100_bases CGAAGTTATGAAGATGCCAGTCTGATCATAACTTCATAATTTAATAACCATTACGACCCAAAATACTCAAGCACTCTTTT TGAGGAAGGATAACGAAAGC
Downstream 100 bases:
>100_bases GCCACTCGCACATATCGCAACCCAAATAAAATTTAGCCTCGAAGATAGGTAACACTAACAGTGAATAATAGCGAACTCGG AATTAAGATGGATAACCTAG
Product: flagellar MS-ring protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 566; Mature: 565
Protein sequence:
>566_residues MSTTLTQTSPAATNAGVNNPLNSLKEKWQQYNRGDRQVVILAVLAIVAACVIVLMLWSASQGYRPLYGNQEGVETSQIIE VLEAEGISYRIDANSGLILVTEDKLGPARMLLAARGVKAKVPSGMESLENSNIGTSQFMEQAKYRYSLEGELSRTIMALK AVKTARVHLAIPKKTLFIRQQPELPTASVMLELYAGSNIQPEQIESIVNLVAGSVTGMTPDRVQVVDQEGNHLSSSISVN KDITQARDRQLKYTQELEQSLIDRASSMLLPILGRDHFEVQVAANVNFNQVEETKESLDPLAVVTKENLTSNETNSDMAL GIPGALSNQPPAAEADESNARRNLNSQESRQFDTGRSVRHTRYQQMQLENLSVSVLINKQSAGETGWTQTQLDQLSSMVQ DAIGFSAARGDQFSINSFDFAPTQIAEFEPMPWWQGESYQTYLRYFIGALLGLAMIFFVLRPLVKHLTKTVEHNLKSIDE PAQPSLPPAQATVTKLEGGNNAQAIADQLIGQNQKTGDLNWSGDASLPEPSSPLAVKMEHLSLLANQEPARVAEVIAHWI GDTEHD
Sequences:
>Translated_566_residues MSTTLTQTSPAATNAGVNNPLNSLKEKWQQYNRGDRQVVILAVLAIVAACVIVLMLWSASQGYRPLYGNQEGVETSQIIE VLEAEGISYRIDANSGLILVTEDKLGPARMLLAARGVKAKVPSGMESLENSNIGTSQFMEQAKYRYSLEGELSRTIMALK AVKTARVHLAIPKKTLFIRQQPELPTASVMLELYAGSNIQPEQIESIVNLVAGSVTGMTPDRVQVVDQEGNHLSSSISVN KDITQARDRQLKYTQELEQSLIDRASSMLLPILGRDHFEVQVAANVNFNQVEETKESLDPLAVVTKENLTSNETNSDMAL GIPGALSNQPPAAEADESNARRNLNSQESRQFDTGRSVRHTRYQQMQLENLSVSVLINKQSAGETGWTQTQLDQLSSMVQ DAIGFSAARGDQFSINSFDFAPTQIAEFEPMPWWQGESYQTYLRYFIGALLGLAMIFFVLRPLVKHLTKTVEHNLKSIDE PAQPSLPPAQATVTKLEGGNNAQAIADQLIGQNQKTGDLNWSGDASLPEPSSPLAVKMEHLSLLANQEPARVAEVIAHWI GDTEHD >Mature_565_residues STTLTQTSPAATNAGVNNPLNSLKEKWQQYNRGDRQVVILAVLAIVAACVIVLMLWSASQGYRPLYGNQEGVETSQIIEV LEAEGISYRIDANSGLILVTEDKLGPARMLLAARGVKAKVPSGMESLENSNIGTSQFMEQAKYRYSLEGELSRTIMALKA VKTARVHLAIPKKTLFIRQQPELPTASVMLELYAGSNIQPEQIESIVNLVAGSVTGMTPDRVQVVDQEGNHLSSSISVNK DITQARDRQLKYTQELEQSLIDRASSMLLPILGRDHFEVQVAANVNFNQVEETKESLDPLAVVTKENLTSNETNSDMALG IPGALSNQPPAAEADESNARRNLNSQESRQFDTGRSVRHTRYQQMQLENLSVSVLINKQSAGETGWTQTQLDQLSSMVQD AIGFSAARGDQFSINSFDFAPTQIAEFEPMPWWQGESYQTYLRYFIGALLGLAMIFFVLRPLVKHLTKTVEHNLKSIDEP AQPSLPPAQATVTKLEGGNNAQAIADQLIGQNQKTGDLNWSGDASLPEPSSPLAVKMEHLSLLANQEPARVAEVIAHWIG DTEHD
Specific function: The M ring may be actively involved in energy transduction [H]
COG id: COG1766
COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliF family [H]
Homologues:
Organism=Escherichia coli, GI1788248, Length=441, Percent_Identity=31.7460317460317, Blast_Score=222, Evalue=6e-59,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013556 - InterPro: IPR000067 - InterPro: IPR006182 [H]
Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]
EC number: NA
Molecular weight: Translated: 62123; Mature: 61992
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTLTQTSPAATNAGVNNPLNSLKEKWQQYNRGDRQVVILAVLAIVAACVIVLMLWSAS CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC QGYRPLYGNQEGVETSQIIEVLEAEGISYRIDANSGLILVTEDKLGPARMLLAARGVKAK CCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCHHHHHHHHCCCCCC VPSGMESLENSNIGTSQFMEQAKYRYSLEGELSRTIMALKAVKTARVHLAIPKKTLFIRQ CCCCHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEEECCEEEEEEC QPELPTASVMLELYAGSNIQPEQIESIVNLVAGSVTGMTPDRVQVVDQEGNHLSSSISVN CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCC KDITQARDRQLKYTQELEQSLIDRASSMLLPILGRDHFEVQVAANVNFNQVEETKESLDP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCC LAVVTKENLTSNETNSDMALGIPGALSNQPPAAEADESNARRNLNSQESRQFDTGRSVRH EEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCHHHHHCCCCCHHHH TRYQQMQLENLSVSVLINKQSAGETGWTQTQLDQLSSMVQDAIGFSAARGDQFSINSFDF HHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCEECCCCCC APTQIAEFEPMPWWQGESYQTYLRYFIGALLGLAMIFFVLRPLVKHLTKTVEHNLKSIDE CCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PAQPSLPPAQATVTKLEGGNNAQAIADQLIGQNQKTGDLNWSGDASLPEPSSPLAVKMEH CCCCCCCCCHHEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEHHHH LSLLANQEPARVAEVIAHWIGDTEHD HHHHCCCCHHHHHHHHHHHHCCCCCC >Mature Secondary Structure STTLTQTSPAATNAGVNNPLNSLKEKWQQYNRGDRQVVILAVLAIVAACVIVLMLWSAS CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC QGYRPLYGNQEGVETSQIIEVLEAEGISYRIDANSGLILVTEDKLGPARMLLAARGVKAK CCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCHHHHHHHHCCCCCC VPSGMESLENSNIGTSQFMEQAKYRYSLEGELSRTIMALKAVKTARVHLAIPKKTLFIRQ CCCCHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEEECCEEEEEEC QPELPTASVMLELYAGSNIQPEQIESIVNLVAGSVTGMTPDRVQVVDQEGNHLSSSISVN CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCC KDITQARDRQLKYTQELEQSLIDRASSMLLPILGRDHFEVQVAANVNFNQVEETKESLDP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCC LAVVTKENLTSNETNSDMALGIPGALSNQPPAAEADESNARRNLNSQESRQFDTGRSVRH EEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCHHHHHCCCCCHHHH TRYQQMQLENLSVSVLINKQSAGETGWTQTQLDQLSSMVQDAIGFSAARGDQFSINSFDF HHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCEECCCCCC APTQIAEFEPMPWWQGESYQTYLRYFIGALLGLAMIFFVLRPLVKHLTKTVEHNLKSIDE CCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PAQPSLPPAQATVTKLEGGNNAQAIADQLIGQNQKTGDLNWSGDASLPEPSSPLAVKMEH CCCCCCCCCHHEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEHHHH LSLLANQEPARVAEVIAHWIGDTEHD HHHHCCCCHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8675317; 10984043 [H]