Definition Shewanella pealeana ATCC 700345 chromosome, complete genome.
Accession NC_009901
Length 5,174,581

Click here to switch to the map view.

The map label for this gene is 157959908

Identifier: 157959908

GI number: 157959908

Start: 88464

End: 88922

Strand: Direct

Name: 157959908

Synonym: Spea_0078

Alternate gene names: NA

Gene position: 88464-88922 (Clockwise)

Preceding gene: 157959907

Following gene: 157959917

Centisome position: 1.71

GC content: 46.62

Gene sequence:

>459_bases
ATGGTTAAGCCTGTTAGTCAGAGTAATAAGCGCGAGCTTGTTATGGGCTTAGTAAAAGGCATTCGGCAAGATATCGAGGA
TTATCGTCAGCTAAAAAGTCTATTGAATCGTCAGCGTGAGCTGATGCAGCGTCGCGACAATCAAGGTCTTAATGAGCACA
ATAAGCTGCAATCTAGCCTGTGTAATAGCTTGATGGTTAAGGCGAGCGATAGAGGACTGTTGTTGCAGGACTTGGGCTTT
GCTGGAGATGCGAGTGGTATGCAGGCGTTAATCGCAAGGCTGCCTAAAGCCTCTTCTGAGCAAGTGGCTAATCTTTGGGA
TAACTTGCTTGGCTTGGTCAGAGAGAGCAAACAAATTAACGAAGATAATGGCAAGCTATTGGTCGCGCAGCAGGAGGTGA
TTAACCAACTCCTGAACCCGAGCAATGAGCTGGCAATTGATTATGGTGATCTGCGCTAA

Upstream 100 bases:

>100_bases
GATGTCGACCTAGATAAGGTTGCGCAGATCCGTCAATCACTGATTGATGGTAGCTTTGAGATTGATATCGACAAGATGGT
CGATGCCATGGTGCAGCAGC

Downstream 100 bases:

>100_bases
AAGGACGTTTGTCGCCTAAGTGGTAGCGTAACGTCCCGCTAGATCATCTAATTGCTTCTGTTCTTGGCGATCTTGCTGGT
ATTGAAGTTGTTGCTTCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MVKPVSQSNKRELVMGLVKGIRQDIEDYRQLKSLLNRQRELMQRRDNQGLNEHNKLQSSLCNSLMVKASDRGLLLQDLGF
AGDASGMQALIARLPKASSEQVANLWDNLLGLVRESKQINEDNGKLLVAQQEVINQLLNPSNELAIDYGDLR

Sequences:

>Translated_152_residues
MVKPVSQSNKRELVMGLVKGIRQDIEDYRQLKSLLNRQRELMQRRDNQGLNEHNKLQSSLCNSLMVKASDRGLLLQDLGF
AGDASGMQALIARLPKASSEQVANLWDNLLGLVRESKQINEDNGKLLVAQQEVINQLLNPSNELAIDYGDLR
>Mature_152_residues
MVKPVSQSNKRELVMGLVKGIRQDIEDYRQLKSLLNRQRELMQRRDNQGLNEHNKLQSSLCNSLMVKASDRGLLLQDLGF
AGDASGMQALIARLPKASSEQVANLWDNLLGLVRESKQINEDNGKLLVAQQEVINQLLNPSNELAIDYGDLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17096; Mature: 17096

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKPVSQSNKRELVMGLVKGIRQDIEDYRQLKSLLNRQRELMQRRDNQGLNEHNKLQSSL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
CNSLMVKASDRGLLLQDLGFAGDASGMQALIARLPKASSEQVANLWDNLLGLVRESKQIN
HHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
EDNGKLLVAQQEVINQLLNPSNELAIDYGDLR
CCCCCEEEEHHHHHHHHHCCCCCEEECCCCCC
>Mature Secondary Structure
MVKPVSQSNKRELVMGLVKGIRQDIEDYRQLKSLLNRQRELMQRRDNQGLNEHNKLQSSL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
CNSLMVKASDRGLLLQDLGFAGDASGMQALIARLPKASSEQVANLWDNLLGLVRESKQIN
HHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
EDNGKLLVAQQEVINQLLNPSNELAIDYGDLR
CCCCCEEEEHHHHHHHHHCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA