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The map label for this gene is flgD [H]

Identifier: 157959903

GI number: 157959903

Start: 85819

End: 86478

Strand: Reverse

Name: flgD [H]

Synonym: Spea_0073

Alternate gene names: 157959903

Gene position: 86478-85819 (Counterclockwise)

Preceding gene: 157959904

Following gene: 157959902

Centisome position: 1.67

GC content: 47.58

Gene sequence:

>660_bases
ATGAATGTGACAGACGTAAGTAACACGAGTGGCGCTACAGATAACATACAGAACTCTCCGGGTAACGATGCCGCTTCAAT
CAAAAACGAATTCATGACATTGATGATTGCCCAGATCCAAAATCAGGACCCGACTAACCCTATCGATGGTACTGAGTATG
TTTCTCAACTCGCCCAGTTCTCACAAGTGGAAAGTTTGGAGCACATGCGCACCAATCAGTCGATGCAGATGGTGATGATG
GAAAACCTTGGCATCGTCCAGTCGGCACAATTGGTAGGAAAGAATGCCATGGTTCCGGCAGCAGACTTCACCCTTGATGA
CAAGGCTCTGGACGGCAAAGTGTACCTAGAGGACTCGGTTGAAAGCCTCAGCATCGACATCGTTGATAGCAGCGGTGACG
TCATTAAGACCGTAGAACTTGGTTCACAAGAAGCCGGCGATACCGCTTTTAGTATCGACCCCGAAGCACTTGGTTTACCG
CCGGGCGAATACAGCCTCGTCGCCAACACGACTGCCGGTGATGTAAGCAAAAAAGCCGATACATTTATTCAGGCTGAAAT
CGAAAAAATTCATTTTATCAGTGCGTCAGGAATGATGATGGCAGAACTTGGCAATGGCCTCGGTACCATCTCTGTACTTG
AAATATCTGAAGTCTCATAA

Upstream 100 bases:

>100_bases
CCGACATGATGGCGGCTAGCCGCTCTTTTGAAACCAGCGTTGAAGTAATGAATCGCGCTCGCTCAATGCAGCAAGGTTTA
TTACAACTAGGAACCAAATA

Downstream 100 bases:

>100_bases
CGCGTTAGTAAAGGATAACCTCCATGTCGTTCAATATTGCATTAAGTGGCCTACAAGCTACCACTCAAGATCTTAATACT
ATTAGTAATAACATTGCTAA

Product: flagellar hook capping protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MNVTDVSNTSGATDNIQNSPGNDAASIKNEFMTLMIAQIQNQDPTNPIDGTEYVSQLAQFSQVESLEHMRTNQSMQMVMM
ENLGIVQSAQLVGKNAMVPAADFTLDDKALDGKVYLEDSVESLSIDIVDSSGDVIKTVELGSQEAGDTAFSIDPEALGLP
PGEYSLVANTTAGDVSKKADTFIQAEIEKIHFISASGMMMAELGNGLGTISVLEISEVS

Sequences:

>Translated_219_residues
MNVTDVSNTSGATDNIQNSPGNDAASIKNEFMTLMIAQIQNQDPTNPIDGTEYVSQLAQFSQVESLEHMRTNQSMQMVMM
ENLGIVQSAQLVGKNAMVPAADFTLDDKALDGKVYLEDSVESLSIDIVDSSGDVIKTVELGSQEAGDTAFSIDPEALGLP
PGEYSLVANTTAGDVSKKADTFIQAEIEKIHFISASGMMMAELGNGLGTISVLEISEVS
>Mature_219_residues
MNVTDVSNTSGATDNIQNSPGNDAASIKNEFMTLMIAQIQNQDPTNPIDGTEYVSQLAQFSQVESLEHMRTNQSMQMVMM
ENLGIVQSAQLVGKNAMVPAADFTLDDKALDGKVYLEDSVESLSIDIVDSSGDVIKTVELGSQEAGDTAFSIDPEALGLP
PGEYSLVANTTAGDVSKKADTFIQAEIEKIHFISASGMMMAELGNGLGTISVLEISEVS

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=208, Percent_Identity=27.4038461538462, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 23260; Mature: 23260

Theoretical pI: Translated: 3.72; Mature: 3.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTDVSNTSGATDNIQNSPGNDAASIKNEFMTLMIAQIQNQDPTNPIDGTEYVSQLAQF
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
SQVESLEHMRTNQSMQMVMMENLGIVQSAQLVGKNAMVPAADFTLDDKALDGKVYLEDSV
HHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEECCCCCCCEEEEECCC
ESLSIDIVDSSGDVIKTVELGSQEAGDTAFSIDPEALGLPPGEYSLVANTTAGDVSKKAD
CEEEEEEEECCCCEEEEEECCCCCCCCCEEEECCHHCCCCCCCEEEEEECCCCCCHHHHH
TFIQAEIEKIHFISASGMMMAELGNGLGTISVLEISEVS
HHHHHHHHEEEEECCCCEEHHHHCCCCCEEEEEEEECCC
>Mature Secondary Structure
MNVTDVSNTSGATDNIQNSPGNDAASIKNEFMTLMIAQIQNQDPTNPIDGTEYVSQLAQF
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
SQVESLEHMRTNQSMQMVMMENLGIVQSAQLVGKNAMVPAADFTLDDKALDGKVYLEDSV
HHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEECCCCCCCEEEEECCC
ESLSIDIVDSSGDVIKTVELGSQEAGDTAFSIDPEALGLPPGEYSLVANTTAGDVSKKAD
CEEEEEEEECCCCEEEEEECCCCCCCCCEEEECCHHCCCCCCCEEEEEECCCCCCHHHHH
TFIQAEIEKIHFISASGMMMAELGNGLGTISVLEISEVS
HHHHHHHHEEEEECCCCEEHHHHCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]