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The map label for this gene is rimN

Identifier: 157959867

GI number: 157959867

Start: 40662

End: 41225

Strand: Direct

Name: rimN

Synonym: Spea_0037

Alternate gene names: 157959867

Gene position: 40662-41225 (Clockwise)

Preceding gene: 157959866

Following gene: 157959868

Centisome position: 0.79

GC content: 46.81

Gene sequence:

>564_bases
ATGTTACAAGTATTGCCAGCTGATGCGGCCGAGTTAGTCGAGCAAGGCGGTGTGATAGCCTATCCAACCGAAGCGGTTTA
TGGTTTAGGTTGCGACCCTGATAACGATGAAGCTATTAATCAACTACTGCAGATAAAGCAGCGTCCTTGGCAGAAAGGGC
TTATTTTGGTTGCGGGTGATTATCAGCAATTATTACCTTATATCGATGAATCCCAATTAAACGCACAGCAGTTGGCATTT
GCTCAGAGTAAATGGCCGGGTCCCTTCACCTTTATCATGCCGGTTAAGCCTGGACTGTCTAAGTTACTCAGTGGCGCTTT
TGACTCGATAGCGGTGCGAGTCACTGCTCATGCAGGCGTAAAAGCTTTATGTGCCGCAATCCATAAACCAATAGTTTCGA
CTAGCGCAAATTTATCAGGACAAGAGCCTGCCTTGTCGCCATTAGCGGTGAAGCAGCAATTTGAAGGTATTATTTCTGGA
TTGGTGGTGGGTGAGCTGGGTAGCCAGGCCTCACCATCTACGATTATCGATGCCAGAAGTGGAACCGTTATAAGAGAAGG
TTAA

Upstream 100 bases:

>100_bases
AGCGCCCAGTTTAAACAATCATATTAACTTTCACTAATGTCGCTTTTGAGTAATGATAGCGGCTGACATTGTGCTGTTTA
TATAAGGTGAAGAGAGACAG

Downstream 100 bases:

>100_bases
TCAGCCTCTATAAAAAGGAATAATATGAGCACACCCGATTCAACACTAGTAAAAGCTTTCTTACTCGATCTTCAAAATCG
AATTTGTAATGGACTCGAAG

Product: SUA5/yciO/yrdC domain-containing protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MLQVLPADAAELVEQGGVIAYPTEAVYGLGCDPDNDEAINQLLQIKQRPWQKGLILVAGDYQQLLPYIDESQLNAQQLAF
AQSKWPGPFTFIMPVKPGLSKLLSGAFDSIAVRVTAHAGVKALCAAIHKPIVSTSANLSGQEPALSPLAVKQQFEGIISG
LVVGELGSQASPSTIIDARSGTVIREG

Sequences:

>Translated_187_residues
MLQVLPADAAELVEQGGVIAYPTEAVYGLGCDPDNDEAINQLLQIKQRPWQKGLILVAGDYQQLLPYIDESQLNAQQLAF
AQSKWPGPFTFIMPVKPGLSKLLSGAFDSIAVRVTAHAGVKALCAAIHKPIVSTSANLSGQEPALSPLAVKQQFEGIISG
LVVGELGSQASPSTIIDARSGTVIREG
>Mature_187_residues
MLQVLPADAAELVEQGGVIAYPTEAVYGLGCDPDNDEAINQLLQIKQRPWQKGLILVAGDYQQLLPYIDESQLNAQQLAF
AQSKWPGPFTFIMPVKPGLSKLLSGAFDSIAVRVTAHAGVKALCAAIHKPIVSTSANLSGQEPALSPLAVKQQFEGIISG
LVVGELGSQASPSTIIDARSGTVIREG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=181, Percent_Identity=50.2762430939227, Blast_Score=176, Evalue=7e-46,
Organism=Escherichia coli, GI87081864, Length=189, Percent_Identity=32.2751322751323, Blast_Score=87, Evalue=9e-19,
Organism=Saccharomyces cerevisiae, GI6321269, Length=157, Percent_Identity=32.484076433121, Blast_Score=65, Evalue=5e-12,
Organism=Drosophila melanogaster, GI78707274, Length=167, Percent_Identity=29.940119760479, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_SHEPA (A8GYH9)

Other databases:

- EMBL:   CP000851
- RefSeq:   YP_001499901.1
- ProteinModelPortal:   A8GYH9
- SMR:   A8GYH9
- STRING:   A8GYH9
- GeneID:   5660438
- GenomeReviews:   CP000851_GR
- KEGG:   spl:Spea_0037
- eggNOG:   COG0009
- HOGENOM:   HBG738264
- OMA:   FGLGCNP
- ProtClustDB:   CLSK905558
- BioCyc:   SPEA398579:SPEA_0037-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 19732; Mature: 19732

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQVLPADAAELVEQGGVIAYPTEAVYGLGCDPDNDEAINQLLQIKQRPWQKGLILVAGD
CCEECCCCHHHHHHCCCEEEECCHHEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECC
YQQLLPYIDESQLNAQQLAFAQSKWPGPFTFIMPVKPGLSKLLSGAFDSIAVRVTAHAGV
HHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCHHHEEEEEECCCCH
KALCAAIHKPIVSTSANLSGQEPALSPLAVKQQFEGIISGLVVGELGSQASPSTIIDARS
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
GTVIREG
CEEEECC
>Mature Secondary Structure
MLQVLPADAAELVEQGGVIAYPTEAVYGLGCDPDNDEAINQLLQIKQRPWQKGLILVAGD
CCEECCCCHHHHHHCCCEEEECCHHEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECC
YQQLLPYIDESQLNAQQLAFAQSKWPGPFTFIMPVKPGLSKLLSGAFDSIAVRVTAHAGV
HHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCHHHEEEEEECCCCH
KALCAAIHKPIVSTSANLSGQEPALSPLAVKQQFEGIISGLVVGELGSQASPSTIIDARS
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
GTVIREG
CEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA