Click here to switch to the map view.

The map label for this gene is ybaK [H]

Identifier: 157959843

GI number: 157959843

Start: 16567

End: 17037

Strand: Reverse

Name: ybaK [H]

Synonym: Spea_0013

Alternate gene names: 157959843

Gene position: 17037-16567 (Counterclockwise)

Preceding gene: 157959844

Following gene: 157959842

Centisome position: 0.33

GC content: 48.83

Gene sequence:

>471_bases
ATGACTCCCGCTATCGACCTGCTCGTAAAACACAAGATTGCCCACCAAGTTCATGAGTATCACCATGATCCCGCTTGCCA
AGCTTATGGCTTAGAAGCGGCTGAGAAAATCGGTGTTGCAGCTGAGCTGGTATTCAAGACCTTAGTGGTTAAATTGGATG
GCAAGCAACTTGCGGTAGCTATCATTCCTGTAGCCGAAAAGCTTAGTATGAAGGCAATCGCAAAAGCAGCCAAAGCCAAA
AAAGCTGCGATGGCCGAAGCCATGGAAGTACAGCGTAGCTCAGGCTATGTGCTCGGCGGTGTCAGTCCTTTAGGGCAGAA
GCGACAGCTGCCAACGGTTATTGATCAGTCTGCAGCATCGCTCGATAAGATGTTTGTTAGCGGTGGGCGTCGAGGGTTAG
ATATCGAATTAGCACCTGAAGATATCAAGCTGCTACTAAGAGCACAATTTGCCCCTATCACAGCCGAATAA

Upstream 100 bases:

>100_bases
TATCACGGTATTAAAGTGCAGGTTATGGAAAAATCACTTTAATCCCAAACTCGTACCAACTTAAGCCCACACAGCCTTCG
CTACAAATATAGGTAAATAA

Downstream 100 bases:

>100_bases
CCGTCTATTCATTTGCAGTGTTCCACGTGGAACACTGCAAATAACCAAATGACCCAAGCTCACAAATAAACGCTACGCGC
TTGGATAAACTTAAAGGCTG

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MTPAIDLLVKHKIAHQVHEYHHDPACQAYGLEAAEKIGVAAELVFKTLVVKLDGKQLAVAIIPVAEKLSMKAIAKAAKAK
KAAMAEAMEVQRSSGYVLGGVSPLGQKRQLPTVIDQSAASLDKMFVSGGRRGLDIELAPEDIKLLLRAQFAPITAE

Sequences:

>Translated_156_residues
MTPAIDLLVKHKIAHQVHEYHHDPACQAYGLEAAEKIGVAAELVFKTLVVKLDGKQLAVAIIPVAEKLSMKAIAKAAKAK
KAAMAEAMEVQRSSGYVLGGVSPLGQKRQLPTVIDQSAASLDKMFVSGGRRGLDIELAPEDIKLLLRAQFAPITAE
>Mature_155_residues
TPAIDLLVKHKIAHQVHEYHHDPACQAYGLEAAEKIGVAAELVFKTLVVKLDGKQLAVAIIPVAEKLSMKAIAKAAKAKK
AAMAEAMEVQRSSGYVLGGVSPLGQKRQLPTVIDQSAASLDKMFVSGGRRGLDIELAPEDIKLLLRAQFAPITAE

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=155, Percent_Identity=52.9032258064516, Blast_Score=164, Evalue=3e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16676; Mature: 16545

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAIDLLVKHKIAHQVHEYHHDPACQAYGLEAAEKIGVAAELVFKTLVVKLDGKQLAVA
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHEECCCEEEEE
IIPVAEKLSMKAIAKAAKAKKAAMAEAMEVQRSSGYVLGGVSPLGQKRQLPTVIDQSAAS
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHH
LDKMFVSGGRRGLDIELAPEDIKLLLRAQFAPITAE
HHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TPAIDLLVKHKIAHQVHEYHHDPACQAYGLEAAEKIGVAAELVFKTLVVKLDGKQLAVA
CCHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHEECCCEEEEE
IIPVAEKLSMKAIAKAAKAKKAAMAEAMEVQRSSGYVLGGVSPLGQKRQLPTVIDQSAAS
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHH
LDKMFVSGGRRGLDIELAPEDIKLLLRAQFAPITAE
HHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]