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The map label for this gene is ompA [H]

Identifier: 157826288

GI number: 157826288

Start: 1142989

End: 1143387

Strand: Reverse

Name: ompA [H]

Synonym: A1C_06375

Alternate gene names: 157826288

Gene position: 1143387-1142989 (Counterclockwise)

Preceding gene: 157826289

Following gene: 157826287

Centisome position: 92.88

GC content: 33.83

Gene sequence:

>399_bases
TTGATAGCTACAAATATCAATTTCGGTGTGAATGCTCAGGGGGGTACTTTAGAATTGAACGGTCCTGTCGGTAAGAGTTA
TACATTAAGCAGAACTATAGCAAACAGTAATAATGCTACAATTAATATTAATACTCTCGGTTTGGTTACTGCAGATAATG
CTAGTATCGGGACGGTTGCACAAATTAACATTCAAGATAATAAGACTTTTGCAATAAATGTTAAGAACGCTGATATTGAG
ATATTAAACGCTCAAGTTATTGATTTTAAAGGTGCAAACTCAAAGCTTTTTTTAGTTAACAATAGTGCTACAGATGATAG
AGTTGTATTAAAAATGATTTACCGGCGTTTACAACCGGTGGTGGTATGTTACTTCTTCTTGGTACAGAAAACCTTATAA

Upstream 100 bases:

>100_bases
CTGCGGATCTTGTTTTACAAGTGATATTTATGCACAAATCGTAAATTTTGATGATATTGCCGGTGGTGGAGCAGTCGGTA
CGATACAAGTCGGCGGTAAT

Downstream 100 bases:

>100_bases
CCTTACAAGATGATTGTGCAGCTAAAGCAATATGTACGGCAGGAAATGAACTAGCATCATTAAATGTTTTAGGGAATGTA
GCCTTTAATAATATAGATAC

Product: Outer memberane protein rOmpA

Products: NA

Alternate protein names: 190 kDa antigen; Cell surface antigen; rOmp A; rOmpA; 120 kDa outer membrane protein OmpA [H]

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MIATNINFGVNAQGGTLELNGPVGKSYTLSRTIANSNNATININTLGLVTADNASIGTVAQINIQDNKTFAINVKNADIE
ILNAQVIDFKGANSKLFLVNNSATDDRVVLKMIYRRLQPVVVCYFFLVQKTL

Sequences:

>Translated_132_residues
MIATNINFGVNAQGGTLELNGPVGKSYTLSRTIANSNNATININTLGLVTADNASIGTVAQINIQDNKTFAINVKNADIE
ILNAQVIDFKGANSKLFLVNNSATDDRVVLKMIYRRLQPVVVCYFFLVQKTL
>Mature_132_residues
MIATNINFGVNAQGGTLELNGPVGKSYTLSRTIANSNNATININTLGLVTADNASIGTVAQINIQDNKTFAINVKNADIE
ILNAQVIDFKGANSKLFLVNNSATDDRVVLKMIYRRLQPVVVCYFFLVQKTL

Specific function: Elicits protective immunity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: 32 kDa beta peptide:Cell outer membrane; Multi-pass membrane protein (Potential). Note=The cleaved C- terminal fragment (autotransporter domain) is localized in the outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR006315 [H]

Pfam domain/function: PF03797 Autotransporter [H]

EC number: NA

Molecular weight: Translated: 14306; Mature: 14306

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIATNINFGVNAQGGTLELNGPVGKSYTLSRTIANSNNATININTLGLVTADNASIGTVA
CEEECCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCCCEEE
QINIQDNKTFAINVKNADIEILNAQVIDFKGANSKLFLVNNSATDDRVVLKMIYRRLQPV
EEEECCCCEEEEEEECCCEEEEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHH
VVCYFFLVQKTL
HHHHHHHHHHCC
>Mature Secondary Structure
MIATNINFGVNAQGGTLELNGPVGKSYTLSRTIANSNNATININTLGLVTADNASIGTVA
CEEECCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCCCEEE
QINIQDNKTFAINVKNADIEILNAQVIDFKGANSKLFLVNNSATDDRVVLKMIYRRLQPV
EEEECCCCEEEEEEECCCEEEEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHH
VVCYFFLVQKTL
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2117568 [H]