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The map label for this gene is yebA [H]

Identifier: 157826139

GI number: 157826139

Start: 992692

End: 993597

Strand: Reverse

Name: yebA [H]

Synonym: A1C_05580

Alternate gene names: 157826139

Gene position: 993597-992692 (Counterclockwise)

Preceding gene: 157826140

Following gene: 157826138

Centisome position: 80.71

GC content: 29.91

Gene sequence:

>906_bases
GTGTTATTTAAGCAATATTTTAAACTTAAAATTTACGTATATTTACTTTTAATGTCTTTTCAAAAATATATCTTTTTACT
ATTTATAGTTTTTCTTGTTCAAGGTTGCAGCAGTATTAAAGAATCTAGTGATACTATATTACTTTCTACTACTTCATCTC
AATTAAAGCAAAAATATAAAATCAGTCATTCGGATTTAGTAGTACAGTATGATTTAACAAACAAAAATAACAAATGTATA
TACGCAAAAAACTTAGGTATGATAATTAATAACCCTAAGCAGAATAAGATTTTTTTACAAAAATTTTATAATAAAAACCC
GACAGAATTTAATAAAGCAGCTGAAATAAAAATATCTGATATAAAGGCAGTTGTAACAAAATTAAATTCAAAATATAAGT
TTCTCTCTAAACCGGAAGCTAGTTATTTTACAAAAAAACCGACTCATAGGAATAATATTTCAGAACTAATCAAGCTTGAT
AAGATTATTAGCACGATACCGCTTATGATGCCAGAATATGAGCCGAAAATTACTAGCCATTACGGAACTAGGAAAAGTCC
TCATAAAAAGAAAAGAAAAAAGAAATGTTTCCATAGCGGTATTGATTTACAAGCTAAAAAAGCAGCACCGATATATGCAG
CAGCAAGCGGAATTGTTATAAAAGCCGCTAGAGCCCCTGATTACGGGAATTTTGTTGAGATTAAACATGGACGCAAATTT
GTTACGAAATATGCTCATTTAAAGGAAATGTTAGTTAAGGAAGGCAATAAAATTAAGCGGGGTCAATTGATCGGTATACA
AGGAAGAACCGGTAATGCAACGGGTGAACATTTGCATTTTGAAATTCTACTAGACAACAAAGCAATCAATCCGTTGGACT
TTATTTTTCACTGCCGTAAATGTTGA

Upstream 100 bases:

>100_bases
TTATTGAATATGAGCTTTTAAATAGTGATAAAAATATGGTCAAGTGTGGCTTAATGTTAATTAATCCTCTAAATATTATA
GGAGAATTAGAAAAATTAAC

Downstream 100 bases:

>100_bases
TAAATATGTTTTATTGTATAGTTTTATTTCATTCCCGCGTATGCGGGAATCCAGTGAGACATATATAAAATACTTGTTTT
TATATGTCTATTTTACCAAA

Product: periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MLFKQYFKLKIYVYLLLMSFQKYIFLLFIVFLVQGCSSIKESSDTILLSTTSSQLKQKYKISHSDLVVQYDLTNKNNKCI
YAKNLGMIINNPKQNKIFLQKFYNKNPTEFNKAAEIKISDIKAVVTKLNSKYKFLSKPEASYFTKKPTHRNNISELIKLD
KIISTIPLMMPEYEPKITSHYGTRKSPHKKKRKKKCFHSGIDLQAKKAAPIYAAASGIVIKAARAPDYGNFVEIKHGRKF
VTKYAHLKEMLVKEGNKIKRGQLIGIQGRTGNATGEHLHFEILLDNKAINPLDFIFHCRKC

Sequences:

>Translated_301_residues
MLFKQYFKLKIYVYLLLMSFQKYIFLLFIVFLVQGCSSIKESSDTILLSTTSSQLKQKYKISHSDLVVQYDLTNKNNKCI
YAKNLGMIINNPKQNKIFLQKFYNKNPTEFNKAAEIKISDIKAVVTKLNSKYKFLSKPEASYFTKKPTHRNNISELIKLD
KIISTIPLMMPEYEPKITSHYGTRKSPHKKKRKKKCFHSGIDLQAKKAAPIYAAASGIVIKAARAPDYGNFVEIKHGRKF
VTKYAHLKEMLVKEGNKIKRGQLIGIQGRTGNATGEHLHFEILLDNKAINPLDFIFHCRKC
>Mature_301_residues
MLFKQYFKLKIYVYLLLMSFQKYIFLLFIVFLVQGCSSIKESSDTILLSTTSSQLKQKYKISHSDLVVQYDLTNKNNKCI
YAKNLGMIINNPKQNKIFLQKFYNKNPTEFNKAAEIKISDIKAVVTKLNSKYKFLSKPEASYFTKKPTHRNNISELIKLD
KIISTIPLMMPEYEPKITSHYGTRKSPHKKKRKKKCFHSGIDLQAKKAAPIYAAASGIVIKAARAPDYGNFVEIKHGRKF
VTKYAHLKEMLVKEGNKIKRGQLIGIQGRTGNATGEHLHFEILLDNKAINPLDFIFHCRKC

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=120, Percent_Identity=36.6666666666667, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082174, Length=97, Percent_Identity=41.2371134020619, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789099, Length=97, Percent_Identity=41.2371134020619, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 34665; Mature: 34665

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFKQYFKLKIYVYLLLMSFQKYIFLLFIVFLVQGCSSIKESSDTILLSTTSSQLKQKYK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHC
ISHSDLVVQYDLTNKNNKCIYAKNLGMIINNPKQNKIFLQKFYNKNPTEFNKAAEIKISD
CCCCCEEEEEEECCCCCCEEEEECCCEEEECCCCCHHHHHHHHCCCCCCCCCEEEEEHHH
IKAVVTKLNSKYKFLSKPEASYFTKKPTHRNNISELIKLDKIISTIPLMMPEYEPKITSH
HHHHHHHHCCCHHCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHC
YGTRKSPHKKKRKKKCFHSGIDLQAKKAAPIYAAASGIVIKAARAPDYGNFVEIKHGRKF
CCCCCCHHHHHHHHHHHHCCCCCEECCCCCEEEECCCEEEEEECCCCCCCEEEEECCHHH
VTKYAHLKEMLVKEGNKIKRGQLIGIQGRTGNATGEHLHFEILLDNKAINPLDFIFHCRK
HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCC
C
C
>Mature Secondary Structure
MLFKQYFKLKIYVYLLLMSFQKYIFLLFIVFLVQGCSSIKESSDTILLSTTSSQLKQKYK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHC
ISHSDLVVQYDLTNKNNKCIYAKNLGMIINNPKQNKIFLQKFYNKNPTEFNKAAEIKISD
CCCCCEEEEEEECCCCCCEEEEECCCEEEECCCCCHHHHHHHHCCCCCCCCCEEEEEHHH
IKAVVTKLNSKYKFLSKPEASYFTKKPTHRNNISELIKLDKIISTIPLMMPEYEPKITSH
HHHHHHHHCCCHHCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHC
YGTRKSPHKKKRKKKCFHSGIDLQAKKAAPIYAAASGIVIKAARAPDYGNFVEIKHGRKF
CCCCCCHHHHHHHHHHHHCCCCCEECCCCCEEEECCCEEEEEECCCCCCCEEEEECCHHH
VTKYAHLKEMLVKEGNKIKRGQLIGIQGRTGNATGEHLHFEILLDNKAINPLDFIFHCRK
HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCC
C
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]