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The map label for this gene is ccmF [H]

Identifier: 157826128

GI number: 157826128

Start: 977911

End: 979569

Strand: Direct

Name: ccmF [H]

Synonym: A1C_05515

Alternate gene names: 157826128

Gene position: 977911-979569 (Clockwise)

Preceding gene: 157826127

Following gene: 157826136

Centisome position: 79.44

GC content: 32.01

Gene sequence:

>1659_bases
ATGTTATTATGGTTTTGTTTATTACAAATCGTTAGTTGCTGTTATATATTTTTAGTGAAAGATAAACAGCTTCAACTTTT
ATCTATCATCATATTATCAGCTATACAATTACTGTTTAGCAGTTTTATTTATTTTACCTCCAATCCTTTTAACGTATTTT
CTGTCGCTCCTAAAGAAGGGTTAGGCTTAAACCCGATGCTACAAGATATTGCTTTGAGCATTCATCCTCCTCTGCTTTAT
TTAGGCTATGTCAGCTATTTAGTGCCTTTTACTATTGTTTGTGCCGCTATGTCATTCCAGCGTAGGCACGAATCCATTGC
TTCTTTTATAAAATTTTTACTGGATTCACGCATACGCGGGAATGACATAAAACTTCTCAAAACATTTTCCAATATTGGTA
TCTTATTTACTACCATAGGAATTAGCCTTGGTTCTTGGTGGGCATATAGAGAACTCAGCTGGGGTGGATTTTGGTTTTTC
GATCCGGTGGAAAATATTTCGCTATTCCCTTGGTTATCCGGAATTATGCTACATCATGCTATAATTGTAACAACAAAAAC
TGGACGTATGCAAAGCTGGACTATGGTTTTATCACTTACTACTTTTCTGTTAGTCGTATTTAGTACTTTTTTAGTACGTT
CCGGTTTTATTACTTCAATTCACTCTTTTGCATTCTCACCTGAGATTGGAATATACTTGCTTGGGATATTTTTGATTATG
GGGATTGGTGGACTCTGTGTCATCCCGCGTCTTGACTGCTGGATCCAAAAAACAAGTGATAATACTTTTAACTTGATCCC
GCAGTCAAGACGCGGGATGACAATAATAGACAAATGCATACTCCTTGGAAATACTTTCTTCTTACTTAGCCTTATTGTGC
TAATAGCTGCCACACTTTATCCACCAATTTACTCTTTATTTTACGATAAACCAATCATTATTAGTGAAACATTTTTTGTT
AATAATTTTATTATATTCGTTATCCCTATTCTTTGTACTATAGGATTATTTACTACCAGTAGCTCTATTAAAAAACATAT
TATAATTCTAATATTATCTCTAATAATTACTTATTCAATATCATTAAAAGTCACATTTAGTGTTATATCGATTTTAACTA
TAATCACATCGATATTTTTGATGTTTCATAATATTCATTATCTTTTGGTTAACACTAATTATTTTAGAAATAAACTTAAA
GCAAGTGCTGCTAGTATGATCCTTGGGCATTTTGGTTTTGCACTAGTTGCTTTCAGCATTACCATGAATTCATTATTACA
AAGTGAAATGGATTTTACCGGAGAAGTAGGAACAAGTAAAACATTTAACGAATTTAAAGTAACGTTGCAAAATATTAAGT
TCGCTCAAGGTAAAAATTATTATAGACAAATCGCTGAATTTTGGCTTGAGGATAATAGCCGTAATATAACTATATTAAAG
CCGGAAAATAGGCTTTATATAGTTGAAAAGAGTTTATCGCAAGAAAGCGATATATATTCTTACTTATCATATGATCTTTA
CGCAGTTTTAAGTAATATAGACGGCGATATAATTCATGCTAAAATATATTACAAGCCAATGATGAGCTTTATTTGGCTTG
GAATTATTCTTACCGCTTCCGGTTTTTTTATTGCACTAATAAGAAACAATTCTAGCTAA

Upstream 100 bases:

>100_bases
CACTTCTGACTTTTCACTACAAAATGTTTTCTTAAATTCCAGTACTTTAAAACCTTTAATATATAAAATAGCCGGCAGTT
GGTCGAGCCATGAAGGCTCA

Downstream 100 bases:

>100_bases
TTCAAATTAGCACATTTAAGGTTTAAAATTAGTAGCATTATGTTCAAGATATTCTTTAGTTCCTTTATCTCAATTTATTT
GTCATATTTTTTCAGCGATA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 552; Mature: 552

Protein sequence:

>552_residues
MLLWFCLLQIVSCCYIFLVKDKQLQLLSIIILSAIQLLFSSFIYFTSNPFNVFSVAPKEGLGLNPMLQDIALSIHPPLLY
LGYVSYLVPFTIVCAAMSFQRRHESIASFIKFLLDSRIRGNDIKLLKTFSNIGILFTTIGISLGSWWAYRELSWGGFWFF
DPVENISLFPWLSGIMLHHAIIVTTKTGRMQSWTMVLSLTTFLLVVFSTFLVRSGFITSIHSFAFSPEIGIYLLGIFLIM
GIGGLCVIPRLDCWIQKTSDNTFNLIPQSRRGMTIIDKCILLGNTFFLLSLIVLIAATLYPPIYSLFYDKPIIISETFFV
NNFIIFVIPILCTIGLFTTSSSIKKHIIILILSLIITYSISLKVTFSVISILTIITSIFLMFHNIHYLLVNTNYFRNKLK
ASAASMILGHFGFALVAFSITMNSLLQSEMDFTGEVGTSKTFNEFKVTLQNIKFAQGKNYYRQIAEFWLEDNSRNITILK
PENRLYIVEKSLSQESDIYSYLSYDLYAVLSNIDGDIIHAKIYYKPMMSFIWLGIILTASGFFIALIRNNSS

Sequences:

>Translated_552_residues
MLLWFCLLQIVSCCYIFLVKDKQLQLLSIIILSAIQLLFSSFIYFTSNPFNVFSVAPKEGLGLNPMLQDIALSIHPPLLY
LGYVSYLVPFTIVCAAMSFQRRHESIASFIKFLLDSRIRGNDIKLLKTFSNIGILFTTIGISLGSWWAYRELSWGGFWFF
DPVENISLFPWLSGIMLHHAIIVTTKTGRMQSWTMVLSLTTFLLVVFSTFLVRSGFITSIHSFAFSPEIGIYLLGIFLIM
GIGGLCVIPRLDCWIQKTSDNTFNLIPQSRRGMTIIDKCILLGNTFFLLSLIVLIAATLYPPIYSLFYDKPIIISETFFV
NNFIIFVIPILCTIGLFTTSSSIKKHIIILILSLIITYSISLKVTFSVISILTIITSIFLMFHNIHYLLVNTNYFRNKLK
ASAASMILGHFGFALVAFSITMNSLLQSEMDFTGEVGTSKTFNEFKVTLQNIKFAQGKNYYRQIAEFWLEDNSRNITILK
PENRLYIVEKSLSQESDIYSYLSYDLYAVLSNIDGDIIHAKIYYKPMMSFIWLGIILTASGFFIALIRNNSS
>Mature_552_residues
MLLWFCLLQIVSCCYIFLVKDKQLQLLSIIILSAIQLLFSSFIYFTSNPFNVFSVAPKEGLGLNPMLQDIALSIHPPLLY
LGYVSYLVPFTIVCAAMSFQRRHESIASFIKFLLDSRIRGNDIKLLKTFSNIGILFTTIGISLGSWWAYRELSWGGFWFF
DPVENISLFPWLSGIMLHHAIIVTTKTGRMQSWTMVLSLTTFLLVVFSTFLVRSGFITSIHSFAFSPEIGIYLLGIFLIM
GIGGLCVIPRLDCWIQKTSDNTFNLIPQSRRGMTIIDKCILLGNTFFLLSLIVLIAATLYPPIYSLFYDKPIIISETFFV
NNFIIFVIPILCTIGLFTTSSSIKKHIIILILSLIITYSISLKVTFSVISILTIITSIFLMFHNIHYLLVNTNYFRNKLK
ASAASMILGHFGFALVAFSITMNSLLQSEMDFTGEVGTSKTFNEFKVTLQNIKFAQGKNYYRQIAEFWLEDNSRNITILK
PENRLYIVEKSLSQESDIYSYLSYDLYAVLSNIDGDIIHAKIYYKPMMSFIWLGIILTASGFFIALIRNNSS

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=560, Percent_Identity=29.8214285714286, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI1790511, Length=305, Percent_Identity=32.4590163934426, Blast_Score=145, Evalue=8e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 62818; Mature: 62818

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLWFCLLQIVSCCYIFLVKDKQLQLLSIIILSAIQLLFSSFIYFTSNPFNVFSVAPKEG
CHHHHHHHHHHHHHHEEHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
LGLNPMLQDIALSIHPPLLYLGYVSYLVPFTIVCAAMSFQRRHESIASFIKFLLDSRIRG
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NDIKLLKTFSNIGILFTTIGISLGSWWAYRELSWGGFWFFDPVENISLFPWLSGIMLHHA
CCHHHHHHHHCCCCEEHHHHHHHCCCCEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHE
IIVTTKTGRMQSWTMVLSLTTFLLVVFSTFLVRSGFITSIHSFAFSPEIGIYLLGIFLIM
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHH
GIGGLCVIPRLDCWIQKTSDNTFNLIPQSRRGMTIIDKCILLGNTFFLLSLIVLIAATLY
CCCCEEECCCCCCEEEECCCCCEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
PPIYSLFYDKPIIISETFFVNNFIIFVIPILCTIGLFTTSSSIKKHIIILILSLIITYSI
HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
SLKVTFSVISILTIITSIFLMFHNIHYLLVNTNYFRNKLKASAASMILGHFGFALVAFSI
HEEHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMNSLLQSEMDFTGEVGTSKTFNEFKVTLQNIKFAQGKNYYRQIAEFWLEDNSRNITILK
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEC
PENRLYIVEKSLSQESDIYSYLSYDLYAVLSNIDGDIIHAKIYYKPMMSFIWLGIILTAS
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCC
GFFIALIRNNSS
CEEEEEEECCCC
>Mature Secondary Structure
MLLWFCLLQIVSCCYIFLVKDKQLQLLSIIILSAIQLLFSSFIYFTSNPFNVFSVAPKEG
CHHHHHHHHHHHHHHEEHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
LGLNPMLQDIALSIHPPLLYLGYVSYLVPFTIVCAAMSFQRRHESIASFIKFLLDSRIRG
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NDIKLLKTFSNIGILFTTIGISLGSWWAYRELSWGGFWFFDPVENISLFPWLSGIMLHHA
CCHHHHHHHHCCCCEEHHHHHHHCCCCEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHE
IIVTTKTGRMQSWTMVLSLTTFLLVVFSTFLVRSGFITSIHSFAFSPEIGIYLLGIFLIM
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHH
GIGGLCVIPRLDCWIQKTSDNTFNLIPQSRRGMTIIDKCILLGNTFFLLSLIVLIAATLY
CCCCEEECCCCCCEEEECCCCCEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
PPIYSLFYDKPIIISETFFVNNFIIFVIPILCTIGLFTTSSSIKKHIIILILSLIITYSI
HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
SLKVTFSVISILTIITSIFLMFHNIHYLLVNTNYFRNKLKASAASMILGHFGFALVAFSI
HEEHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMNSLLQSEMDFTGEVGTSKTFNEFKVTLQNIKFAQGKNYYRQIAEFWLEDNSRNITILK
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEC
PENRLYIVEKSLSQESDIYSYLSYDLYAVLSNIDGDIIHAKIYYKPMMSFIWLGIILTAS
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCC
GFFIALIRNNSS
CEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]