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The map label for this gene is lptD [H]

Identifier: 157826082

GI number: 157826082

Start: 929606

End: 931702

Strand: Reverse

Name: lptD [H]

Synonym: A1C_05210

Alternate gene names: 157826082

Gene position: 931702-929606 (Counterclockwise)

Preceding gene: 157826089

Following gene: 157826081

Centisome position: 75.68

GC content: 31.04

Gene sequence:

>2097_bases
TTGATAAGTTTTGCCGATTTTTCTAAGAATGGTCAAAATATTAAAATAAGCAATATGATAGCCGACTTCGTAGAGTATAA
CGAAAGTCAGGATTTAATATATGCTAAAGGTAATATAAGAATTATCACGGATGAGTACTTATTAACGGCAGATAATTTAC
TTTATGATATAGAAAACGATATTTTATGGGCAGGAGGTAATGTCCGAATTACGGATAAACAAAACAGAATAATAGAGGGT
GATAAAGCAGTTTTAAAAGACGAATTTAAGAAAGGGATCATATCAGAATTCATTTTACTTGCCGGTGATAATAATCTTTT
AATTGCTAAAGTTGCTGAAAGAATAGATAAAAATAATCTTAAACTGCACCATGCCGAATTTACCCCTTGCGATGTTACTT
GTAACAGAAACCCTATTTGGCAAATTGCTTCTAAGGATACTTATATTCATTCTGAAGAGCATAGAATAGTTTATAAACAC
GTATTTTTTGAAGTATACGGCGTACCGATTTTTTACTTACCATATTTTTTCCATCCGACGCCTACGGCCCCTGCAACTTC
TGGATTATTGGTACCTGGCGTCAAAAATAAAGGGTTTGGTATACCTATATATTTACGTGCAAAACCTAATATGGATTTTA
CTCTCACTCCAAGGCTTTTTAGTAAATATCAAACTTATGAGCTAGAAGCGCGTTATCGTCTGAATGATACCGATAATATG
CATTTTCAAGGTAGTTACGGTAAATTACCATATTTTCTAACAAAAGACGGCAGTATAGTAAAAAATAAAAAAGTTTCTTC
TTATCATTATATAGCAAGTGGCAATTTTATTAGTATCGATAAACTTTATGATTACGGTTTTAGAGTAGAACGTACATCGG
ATAAAGCTTATTTAAAAAATGATTATAATAACTATGCTTCATATTTAACTTCTAAAATATTCTTAAATAAAATTTATGAG
GCTGATTATTTTTCGGCGGAAGGATTAAGTTTTCAAGGCTTAGGTAGTAATGATAGTAAGTATACTGATCCGTTAGTATT
ACCGAAAGTCAATACGAAAAACGTGATAAATTTGAATGATAATGACAACAGCCATATCGTTGTTGAAAATAATACATTAA
TGTACAAAGAAAGAATAGGGAAACAAGTTGCTAGAACCTCTTTACAAGTATCCTTTATGCATAATGTGCTGACTTCTTCA
GGGCAAATTTTTGATTTTGTAGCAAAAGATAGAGGTGATTTTTATTTTGCTAGACGTGCTTATTTAGATAAGCCGAGAGA
AAGTAAATCATTTCAAAGAAATATACCGGAATTGCAAACCTTATGGCGTTATCCGTTAGTAAGTAATATAACACAAACGA
TAAATTTACTTATTGAACCGGTAGTTTCTTTTACTATTGGACGTAAACTATCTAAGAAAGATAAAAAATTTGTTATAATT
GATCCTGCTAAATATGAATTATCTGAAAGAAATATCTTTTTATCCAATCGTTATAGTGGTATTGATTGCCATGATTTTGG
TAATAGATTAAGTTATGGCTTAAATGCTAGTATTGCTAAAGAAGAAAATTATTTAAAATTATTATTAGGACAGTCACGTA
ATACAAGATATAGTATAGATTTGCCTGCCGATGATACGGAAAATGTAGGGCAGATTCTAGGTAATCTTTCTAATAATTTA
GAAGTGTTTTATAGCTTTCGGAAAGATAGATATTTCAAACCTATTAGAGATGAAGTGGGAGGAAATTTTAACTATGATAA
GATTAACTTTCTAGGTAGTTTTATTCAGCTCACCAATCTTAAAAAATATTATTCCGTAGAAAGTATAAAGGTTTCAAATA
ATAGAGTACGACAATTTTATGGAGACATAAATTATCATCTAGTGGAAAATTGGACTATAGGCTTTGGTGCCCTCATTGAT
CTCTCTAGACGTTCTCCAAATTTACTTACTCGAACTATTAGGGTGACATATGCTAAAGATTGTGTTAGAATTACTACAAA
GATTTATTCCGCTTATCTAGCCGACGGAAGTAGAGGAATCACAAAGACTACCTCTTCGCCTACTATTTCTATTGGTTTAA
AGGTTTTGAATATGTGA

Upstream 100 bases:

>100_bases
TATTAATAATAGCTTGCTATTATTTTTTACTATTAAAATATATTTGTTAATATAAATGCTATTGCGAATAATATGTTTGC
TTATTATCATAATATTTTCT

Downstream 100 bases:

>100_bases
GTTTCAAATGTGCCATATGTGTCATTCCCGCGGAGGCTGGAATCCATGGTAAATCGAGGTACATCGAGCTTTATTCGGTG
TTGTGTATCTTTTAATGACT

Product: hypothetical protein

Products: NA

Alternate protein names: Organic solvent tolerance protein [H]

Number of amino acids: Translated: 698; Mature: 698

Protein sequence:

>698_residues
MISFADFSKNGQNIKISNMIADFVEYNESQDLIYAKGNIRIITDEYLLTADNLLYDIENDILWAGGNVRITDKQNRIIEG
DKAVLKDEFKKGIISEFILLAGDNNLLIAKVAERIDKNNLKLHHAEFTPCDVTCNRNPIWQIASKDTYIHSEEHRIVYKH
VFFEVYGVPIFYLPYFFHPTPTAPATSGLLVPGVKNKGFGIPIYLRAKPNMDFTLTPRLFSKYQTYELEARYRLNDTDNM
HFQGSYGKLPYFLTKDGSIVKNKKVSSYHYIASGNFISIDKLYDYGFRVERTSDKAYLKNDYNNYASYLTSKIFLNKIYE
ADYFSAEGLSFQGLGSNDSKYTDPLVLPKVNTKNVINLNDNDNSHIVVENNTLMYKERIGKQVARTSLQVSFMHNVLTSS
GQIFDFVAKDRGDFYFARRAYLDKPRESKSFQRNIPELQTLWRYPLVSNITQTINLLIEPVVSFTIGRKLSKKDKKFVII
DPAKYELSERNIFLSNRYSGIDCHDFGNRLSYGLNASIAKEENYLKLLLGQSRNTRYSIDLPADDTENVGQILGNLSNNL
EVFYSFRKDRYFKPIRDEVGGNFNYDKINFLGSFIQLTNLKKYYSVESIKVSNNRVRQFYGDINYHLVENWTIGFGALID
LSRRSPNLLTRTIRVTYAKDCVRITTKIYSAYLADGSRGITKTTSSPTISIGLKVLNM

Sequences:

>Translated_698_residues
MISFADFSKNGQNIKISNMIADFVEYNESQDLIYAKGNIRIITDEYLLTADNLLYDIENDILWAGGNVRITDKQNRIIEG
DKAVLKDEFKKGIISEFILLAGDNNLLIAKVAERIDKNNLKLHHAEFTPCDVTCNRNPIWQIASKDTYIHSEEHRIVYKH
VFFEVYGVPIFYLPYFFHPTPTAPATSGLLVPGVKNKGFGIPIYLRAKPNMDFTLTPRLFSKYQTYELEARYRLNDTDNM
HFQGSYGKLPYFLTKDGSIVKNKKVSSYHYIASGNFISIDKLYDYGFRVERTSDKAYLKNDYNNYASYLTSKIFLNKIYE
ADYFSAEGLSFQGLGSNDSKYTDPLVLPKVNTKNVINLNDNDNSHIVVENNTLMYKERIGKQVARTSLQVSFMHNVLTSS
GQIFDFVAKDRGDFYFARRAYLDKPRESKSFQRNIPELQTLWRYPLVSNITQTINLLIEPVVSFTIGRKLSKKDKKFVII
DPAKYELSERNIFLSNRYSGIDCHDFGNRLSYGLNASIAKEENYLKLLLGQSRNTRYSIDLPADDTENVGQILGNLSNNL
EVFYSFRKDRYFKPIRDEVGGNFNYDKINFLGSFIQLTNLKKYYSVESIKVSNNRVRQFYGDINYHLVENWTIGFGALID
LSRRSPNLLTRTIRVTYAKDCVRITTKIYSAYLADGSRGITKTTSSPTISIGLKVLNM
>Mature_698_residues
MISFADFSKNGQNIKISNMIADFVEYNESQDLIYAKGNIRIITDEYLLTADNLLYDIENDILWAGGNVRITDKQNRIIEG
DKAVLKDEFKKGIISEFILLAGDNNLLIAKVAERIDKNNLKLHHAEFTPCDVTCNRNPIWQIASKDTYIHSEEHRIVYKH
VFFEVYGVPIFYLPYFFHPTPTAPATSGLLVPGVKNKGFGIPIYLRAKPNMDFTLTPRLFSKYQTYELEARYRLNDTDNM
HFQGSYGKLPYFLTKDGSIVKNKKVSSYHYIASGNFISIDKLYDYGFRVERTSDKAYLKNDYNNYASYLTSKIFLNKIYE
ADYFSAEGLSFQGLGSNDSKYTDPLVLPKVNTKNVINLNDNDNSHIVVENNTLMYKERIGKQVARTSLQVSFMHNVLTSS
GQIFDFVAKDRGDFYFARRAYLDKPRESKSFQRNIPELQTLWRYPLVSNITQTINLLIEPVVSFTIGRKLSKKDKKFVII
DPAKYELSERNIFLSNRYSGIDCHDFGNRLSYGLNASIAKEENYLKLLLGQSRNTRYSIDLPADDTENVGQILGNLSNNL
EVFYSFRKDRYFKPIRDEVGGNFNYDKINFLGSFIQLTNLKKYYSVESIKVSNNRVRQFYGDINYHLVENWTIGFGALID
LSRRSPNLLTRTIRVTYAKDCVRITTKIYSAYLADGSRGITKTTSSPTISIGLKVLNM

Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]

COG id: COG1452

COG function: function code M; Organic solvent tolerance protein OstA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptD family [H]

Homologues:

None

Paralogues:

None

Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020889
- InterPro:   IPR005653
- InterPro:   IPR007543 [H]

Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]

EC number: NA

Molecular weight: Translated: 80289; Mature: 80289

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISFADFSKNGQNIKISNMIADFVEYNESQDLIYAKGNIRIITDEYLLTADNLLYDIEND
CCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCEEEECCCEEEEECCEEEEECCEEEEECCC
ILWAGGNVRITDKQNRIIEGDKAVLKDEFKKGIISEFILLAGDNNLLIAKVAERIDKNNL
EEEECCCEEEECCCCCEECCCHHHHHHHHHHHHHHEEEEEECCCCEEEEHHHHHHCCCCE
KLHHAEFTPCDVTCNRNPIWQIASKDTYIHSEEHRIVYKHVFFEVYGVPIFYLPYFFHPT
EEEECCCCCEEEEECCCCEEEEECCCCEEECCCCEEEEEEEEHHHHCCEEEEEEEEECCC
PTAPATSGLLVPGVKNKGFGIPIYLRAKPNMDFTLTPRLFSKYQTYELEARYRLNDTDNM
CCCCCCCCEEECCCCCCCCCEEEEEEECCCCCEEECHHHHCCCEEEEEEEEEEECCCCCE
HFQGSYGKLPYFLTKDGSIVKNKKVSSYHYIASGNFISIDKLYDYGFRVERTSDKAYLKN
EEECCCCCCCEEEECCCCEEECCCCCCEEEEECCCEEEEEHHHCCCEEEEECCCCCEECC
DYNNYASYLTSKIFLNKIYEADYFSAEGLSFQGLGSNDSKYTDPLVLPKVNTKNVINLND
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCCCCEEEECC
NDNSHIVVENNTLMYKERIGKQVARTSLQVSFMHNVLTSSGQIFDFVAKDRGDFYFARRA
CCCCEEEEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEHH
YLDKPRESKSFQRNIPELQTLWRYPLVSNITQTINLLIEPVVSFTIGRKLSKKDKKFVII
HHCCCCCCCHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
DPAKYELSERNIFLSNRYSGIDCHDFGNRLSYGLNASIAKEENYLKLLLGQSRNTRYSID
CCCCEEECCCEEEEECCCCCCCHHHCCCHHCCCCCCEEECCCCEEEEEECCCCCCEEEEE
LPADDTENVGQILGNLSNNLEVFYSFRKDRYFKPIRDEVGGNFNYDKINFLGSFIQLTNL
CCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
KKYYSVESIKVSNNRVRQFYGDINYHLVENWTIGFGALIDLSRRSPNLLTRTIRVTYAKD
HHHHEEEEEEECCHHHHHHHCCCEEEEEEEEEECEEEEEEECCCCCCEEEEEEEEEEHHH
CVRITTKIYSAYLADGSRGITKTTSSPTISIGLKVLNM
HHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEEEECC
>Mature Secondary Structure
MISFADFSKNGQNIKISNMIADFVEYNESQDLIYAKGNIRIITDEYLLTADNLLYDIEND
CCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCEEEECCCEEEEECCEEEEECCEEEEECCC
ILWAGGNVRITDKQNRIIEGDKAVLKDEFKKGIISEFILLAGDNNLLIAKVAERIDKNNL
EEEECCCEEEECCCCCEECCCHHHHHHHHHHHHHHEEEEEECCCCEEEEHHHHHHCCCCE
KLHHAEFTPCDVTCNRNPIWQIASKDTYIHSEEHRIVYKHVFFEVYGVPIFYLPYFFHPT
EEEECCCCCEEEEECCCCEEEEECCCCEEECCCCEEEEEEEEHHHHCCEEEEEEEEECCC
PTAPATSGLLVPGVKNKGFGIPIYLRAKPNMDFTLTPRLFSKYQTYELEARYRLNDTDNM
CCCCCCCCEEECCCCCCCCCEEEEEEECCCCCEEECHHHHCCCEEEEEEEEEEECCCCCE
HFQGSYGKLPYFLTKDGSIVKNKKVSSYHYIASGNFISIDKLYDYGFRVERTSDKAYLKN
EEECCCCCCCEEEECCCCEEECCCCCCEEEEECCCEEEEEHHHCCCEEEEECCCCCEECC
DYNNYASYLTSKIFLNKIYEADYFSAEGLSFQGLGSNDSKYTDPLVLPKVNTKNVINLND
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCCCCEEEECC
NDNSHIVVENNTLMYKERIGKQVARTSLQVSFMHNVLTSSGQIFDFVAKDRGDFYFARRA
CCCCEEEEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEHH
YLDKPRESKSFQRNIPELQTLWRYPLVSNITQTINLLIEPVVSFTIGRKLSKKDKKFVII
HHCCCCCCCHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
DPAKYELSERNIFLSNRYSGIDCHDFGNRLSYGLNASIAKEENYLKLLLGQSRNTRYSID
CCCCEEECCCEEEEECCCCCCCHHHCCCHHCCCCCCEEECCCCEEEEEECCCCCCEEEEE
LPADDTENVGQILGNLSNNLEVFYSFRKDRYFKPIRDEVGGNFNYDKINFLGSFIQLTNL
CCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
KKYYSVESIKVSNNRVRQFYGDINYHLVENWTIGFGALIDLSRRSPNLLTRTIRVTYAKD
HHHHEEEEEEECCHHHHHHHCCCEEEEEEEEEECEEEEEEECCCCCCEEEEEEEEEEHHH
CVRITTKIYSAYLADGSRGITKTTSSPTISIGLKVLNM
HHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA