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The map label for this gene is ygcF [C]

Identifier: 157825999

GI number: 157825999

Start: 857455

End: 858132

Strand: Reverse

Name: ygcF [C]

Synonym: A1C_04755

Alternate gene names: 157825999

Gene position: 858132-857455 (Counterclockwise)

Preceding gene: 157826000

Following gene: 157825998

Centisome position: 69.71

GC content: 35.4

Gene sequence:

>678_bases
ATGTTCGGACAAAATCCTAAAAGAAGCATATTAAACGGTGACGGTACTACGTTAGAGGTACAGTCCATTTTTAAGACTAT
ACAAGGGGAGGGGCTTTTTGTAGGTGGCCCTGCAATCTTTATTAGGCTTGGAGGGTGTAATCTTGCTTGTAATTTTTGTG
ATACGGAGTTTGAGGATTTTAAGTTAGTGGATATAGTTGAGATTTTAAATAAAGTAGAAAGCTTGGCATTAAATTCTAAA
AATGAAAGAGCGATTAATTTGGTAGTAATAACCGGTGGCGAGCCGATGCGTCAACCTATAGAATTATTATGTCAGAAGTT
ACTAGACCAAGATTTTAAAGTACAAATAGAGACTAACGGTACGTTATATCGCGCTTTGCCAAATGAAGTGTACATAATTT
GTTCGCCGAAAGCCGGTAAAACCGGTTATAGTAAAATACGAGAGGATTTATTGTCTCAAATTAGTGCGGTGAAATTCATC
GTTGCTAAAAATATTTTAGAATATAATTTCATACCGGAAGTAGGGCAAACCTCTTATAATATACCGGTTTTTATTCAACC
TATGGATCAAAACAACCAAAGACTTAATGACGAAAATAATGAGTTAGCAGTAAAATTAGCACTAGAAAGCGGTGCTAGGT
TATCGCTGCAAACTCATAAAATTTTAGGAATTGAGTAA

Upstream 100 bases:

>100_bases
CTTGATTAAATTTTTATTGAGCCAACACCTCTATTAAACTCTATTATTTTTTTTAACTATTTGCTACAATGGGTATTCTG
AGTACATATTAATACTGAAA

Downstream 100 bases:

>100_bases
AGTATTATTGGTGGCATTGCTTAGAAATAGGTTGATAATTTAAAAAGTTTAAGTCATTGCTAGGAAATTACTGCGTTGTT
GCATAGTTCGGTTTATATCA

Product: organic radical activating protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MFGQNPKRSILNGDGTTLEVQSIFKTIQGEGLFVGGPAIFIRLGGCNLACNFCDTEFEDFKLVDIVEILNKVESLALNSK
NERAINLVVITGGEPMRQPIELLCQKLLDQDFKVQIETNGTLYRALPNEVYIICSPKAGKTGYSKIREDLLSQISAVKFI
VAKNILEYNFIPEVGQTSYNIPVFIQPMDQNNQRLNDENNELAVKLALESGARLSLQTHKILGIE

Sequences:

>Translated_225_residues
MFGQNPKRSILNGDGTTLEVQSIFKTIQGEGLFVGGPAIFIRLGGCNLACNFCDTEFEDFKLVDIVEILNKVESLALNSK
NERAINLVVITGGEPMRQPIELLCQKLLDQDFKVQIETNGTLYRALPNEVYIICSPKAGKTGYSKIREDLLSQISAVKFI
VAKNILEYNFIPEVGQTSYNIPVFIQPMDQNNQRLNDENNELAVKLALESGARLSLQTHKILGIE
>Mature_225_residues
MFGQNPKRSILNGDGTTLEVQSIFKTIQGEGLFVGGPAIFIRLGGCNLACNFCDTEFEDFKLVDIVEILNKVESLALNSK
NERAINLVVITGGEPMRQPIELLCQKLLDQDFKVQIETNGTLYRALPNEVYIICSPKAGKTGYSKIREDLLSQISAVKFI
VAKNILEYNFIPEVGQTSYNIPVFIQPMDQNNQRLNDENNELAVKLALESGARLSLQTHKILGIE

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygcF and H.influenzae HI_1189 [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=225, Percent_Identity=32.4444444444444, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25037; Mature: 25037

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGQNPKRSILNGDGTTLEVQSIFKTIQGEGLFVGGPAIFIRLGGCNLACNFCDTEFEDF
CCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCEEEECCEEEEEECCCEEEEECCCCCCCCE
KLVDIVEILNKVESLALNSKNERAINLVVITGGEPMRQPIELLCQKLLDQDFKVQIETNG
EHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCC
TLYRALPNEVYIICSPKAGKTGYSKIREDLLSQISAVKFIVAKNILEYNFIPEVGQTSYN
EEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
IPVFIQPMDQNNQRLNDENNELAVKLALESGARLSLQTHKILGIE
CCEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEEECC
>Mature Secondary Structure
MFGQNPKRSILNGDGTTLEVQSIFKTIQGEGLFVGGPAIFIRLGGCNLACNFCDTEFEDF
CCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCEEEECCEEEEEECCCEEEEECCCCCCCCE
KLVDIVEILNKVESLALNSKNERAINLVVITGGEPMRQPIELLCQKLLDQDFKVQIETNG
EHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCC
TLYRALPNEVYIICSPKAGKTGYSKIREDLLSQISAVKFIVAKNILEYNFIPEVGQTSYN
EEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
IPVFIQPMDQNNQRLNDENNELAVKLALESGARLSLQTHKILGIE
CCEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]