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The map label for this gene is virB9 [H]

Identifier: 157825511

GI number: 157825511

Start: 385158

End: 385634

Strand: Direct

Name: virB9 [H]

Synonym: A1C_02060

Alternate gene names: 157825511

Gene position: 385158-385634 (Clockwise)

Preceding gene: 157825510

Following gene: 157825512

Centisome position: 31.29

GC content: 25.37

Gene sequence:

>477_bases
ATGACAATAGTTAGATTTTATTTTTTAGTTTTTGTATTATTAAGCGGTTTTACAGTACAACGAGAATGTACGCTTGTAGA
TGATCCATGTAATAATAGTAGCAATAATTATATAGATGATTTATCTATAACTAAGGATAATAGGATAAAAACTTATATAT
ATAATCCAAATGAAGTTTATTTATTAGTTTTGCATTTTGGTTTTCAGTCGCATATAGAATTTGCTAAAAATGAAGAAATT
CAAAATATAATTCTTGGGGATGCTTATGCTTGGAAAATAACTCCTTTGGCAAATAGATTATTTATTAAGCCTCTTGAAAA
AGATATTCGTACAAATATGACTATTATAACTAATAAAAGAACATATGAATTTGATATTGCTTCTACGGAACTTATGATGG
GTAACGAAAGGGATTTAGTATATGTAATTAAATTTTACTATCCTAAGAAAAATAGTAATTACATGGCAAGGTTTTAA

Upstream 100 bases:

>100_bases
ATAGCGGTAGTAAGTTATGCTTATGTGCCTATGCAATTAACAGATTCAGAACTTGACATAAATCCGGTAGGGTTTCAAGT
TAACGGATATAGGGTAGACG

Downstream 100 bases:

>100_bases
TTGATGTGATTGCTGTGTGAGTGGGACTTGTCCGCACTGCTCGTCTTATGTCATTCCCGCGTAGGCGGGAATGACATCTG
GTAGTTTGCGATCCACGCGG

Product: VirB9 protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MTIVRFYFLVFVLLSGFTVQRECTLVDDPCNNSSNNYIDDLSITKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEI
QNIILGDAYAWKITPLANRLFIKPLEKDIRTNMTIITNKRTYEFDIASTELMMGNERDLVYVIKFYYPKKNSNYMARF

Sequences:

>Translated_158_residues
MTIVRFYFLVFVLLSGFTVQRECTLVDDPCNNSSNNYIDDLSITKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEI
QNIILGDAYAWKITPLANRLFIKPLEKDIRTNMTIITNKRTYEFDIASTELMMGNERDLVYVIKFYYPKKNSNYMARF
>Mature_157_residues
TIVRFYFLVFVLLSGFTVQRECTLVDDPCNNSSNNYIDDLSITKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQ
NIILGDAYAWKITPLANRLFIKPLEKDIRTNMTIITNKRTYEFDIASTELMMGNERDLVYVIKFYYPKKNSNYMARF

Specific function: Component of the type IV secretion system virB/virD4 which could be a major virulence determinant for subversion of human endothelial cell (HEC) function [H]

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010258
- InterPro:   IPR014148 [H]

Pfam domain/function: PF03524 CagX [H]

EC number: NA

Molecular weight: Translated: 18729; Mature: 18598

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIVRFYFLVFVLLSGFTVQRECTLVDDPCNNSSNNYIDDLSITKDNRIKTYIYNPNEVY
CCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCEECCEEECCCCCEEEEEECCCEEE
LLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITPLANRLFIKPLEKDIRTNMTIITNKR
EEEEECCCHHHHHHCCCCCEEEEEECCEEEEEEECCCCEEEECCCHHHHHCCEEEEECCE
TYEFDIASTELMMGNERDLVYVIKFYYPKKNSNYMARF
EEEEECCCEEEEECCCCCEEEEEEEEECCCCCCEEEEC
>Mature Secondary Structure 
TIVRFYFLVFVLLSGFTVQRECTLVDDPCNNSSNNYIDDLSITKDNRIKTYIYNPNEVY
CHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCEECCEEECCCCCEEEEEECCCEEE
LLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITPLANRLFIKPLEKDIRTNMTIITNKR
EEEEECCCHHHHHHCCCCCEEEEEECCEEEEEEECCCCEEEECCCHHHHHCCEEEEECCE
TYEFDIASTELMMGNERDLVYVIKFYYPKKNSNYMARF
EEEEECCCEEEEECCCCCEEEEEEEEECCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA