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The map label for this gene is yjcC [H]

Identifier: 157825458

GI number: 157825458

Start: 334178

End: 335395

Strand: Direct

Name: yjcC [H]

Synonym: A1C_01795

Alternate gene names: 157825458

Gene position: 334178-335395 (Clockwise)

Preceding gene: 157825455

Following gene: 157825459

Centisome position: 27.15

GC content: 27.91

Gene sequence:

>1218_bases
ATGATAAAAATGGCAATGTCAGAATTAATAACGGATTATAAAGATTTACAAGATGAGATAGATAAATTGGAAAAAGGTGT
ATGTTTTGCTTGTAGATTAGTTAATTATGATGAAATAGAATTTATAGAGCATGATAAGCATTTTATAATTGAAGCTTTAG
ATCAAATCATTGAGGATGTAAGCAAAGAACTTGATATTTTTTCACAGTTTAAGAAAATAAAGAAAGATAGAATATTATTT
ATCCTAAATACTACTGATTCTAACTTAATTAAAAATTTTGCTAGAAAATTATATTTATTTTCGCAGCTTTATATTAATGA
ACAGAAGCCTGCAATTTATATACATTGTTATATTGCTAGTATTAAATTTCCAAAAGTAAGTAATAATGCTAAAGAAATTG
AAAAAACATTAAATATGTTACTTTCACAAAATAATCATTACTATTACCGTGAATATAACAGTACAGCACATGATTTAGAA
AATATAAGAAAATCTAATCTTCAGCTTAACTTATTACGACAAGCCTTGGCAAAAAATACTATGCGATTTGCTTATCAGCC
TATAATAGATCGCAATACCATGAAAGTTCATTATTATGAATGTCTGCTTCGTATACCTTACGAGAACGGCGTTTATATTT
CCGTAGGTCCTATAATCCCTATTGCTGAAAATAAAGGATTAATTTTTGTAATTGATCAAATTGTTTTGGAAATGACTATT
AACAAACTTGCAAGCAACCCAAACTTAATGTTAGCCGTTAATATTTCAAATATAGGAACAAGCGATGAAGCTTTATGGGA
AATAGCAGAAAACTTATTAAAAGCTCATAATGTTCGAGATCGTTTAATTATTGAAATTACAGAAACTTCTTTCAATGAGA
ATTATGATAAAATAACTTTATTTATTAATAAACTACGTAAGTACGGATGTAAATTTGCATTAGACGATTTTGGCTCGGGT
TTTACTTCTTTTAAACAACTTCAAAGCTTACCAATTGATATTATCAAAATTGACGGTAAATATGTGCGTAGTATTACAAG
TGATATACAAAGTAGGTATTTTGTAGAAAGATTAATTAAAATTTCAGAAGATTTAGGTATTGCAACAGTAGCTGAATTCG
TAGAAAACGGAGAAATAGCCAAATTTTTAATTGATCTAAAAGTCGGTGGGCTACAAGGGAACTTCTATTCCGAAGCAAAA
TTTGATAGAGCGGAGTAG

Upstream 100 bases:

>100_bases
GTTTTAACACACTTAATCTTTCTTGTATCCTTTCTATGCGGCTCATATTTTTATTTCATTTATAGTAAAAATGTCCTAAT
ATCCTTGAGTATATAATTTT

Downstream 100 bases:

>100_bases
TGTAAATCTGTCTCGTATGTCATTCCCACCTACGCTGGCATGACATACGAAGTATAATACTTGACAATCTACATAAAAAC
CTCTATGCAGAACTCAACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MIKMAMSELITDYKDLQDEIDKLEKGVCFACRLVNYDEIEFIEHDKHFIIEALDQIIEDVSKELDIFSQFKKIKKDRILF
ILNTTDSNLIKNFARKLYLFSQLYINEQKPAIYIHCYIASIKFPKVSNNAKEIEKTLNMLLSQNNHYYYREYNSTAHDLE
NIRKSNLQLNLLRQALAKNTMRFAYQPIIDRNTMKVHYYECLLRIPYENGVYISVGPIIPIAENKGLIFVIDQIVLEMTI
NKLASNPNLMLAVNISNIGTSDEALWEIAENLLKAHNVRDRLIIEITETSFNENYDKITLFINKLRKYGCKFALDDFGSG
FTSFKQLQSLPIDIIKIDGKYVRSITSDIQSRYFVERLIKISEDLGIATVAEFVENGEIAKFLIDLKVGGLQGNFYSEAK
FDRAE

Sequences:

>Translated_405_residues
MIKMAMSELITDYKDLQDEIDKLEKGVCFACRLVNYDEIEFIEHDKHFIIEALDQIIEDVSKELDIFSQFKKIKKDRILF
ILNTTDSNLIKNFARKLYLFSQLYINEQKPAIYIHCYIASIKFPKVSNNAKEIEKTLNMLLSQNNHYYYREYNSTAHDLE
NIRKSNLQLNLLRQALAKNTMRFAYQPIIDRNTMKVHYYECLLRIPYENGVYISVGPIIPIAENKGLIFVIDQIVLEMTI
NKLASNPNLMLAVNISNIGTSDEALWEIAENLLKAHNVRDRLIIEITETSFNENYDKITLFINKLRKYGCKFALDDFGSG
FTSFKQLQSLPIDIIKIDGKYVRSITSDIQSRYFVERLIKISEDLGIATVAEFVENGEIAKFLIDLKVGGLQGNFYSEAK
FDRAE
>Mature_405_residues
MIKMAMSELITDYKDLQDEIDKLEKGVCFACRLVNYDEIEFIEHDKHFIIEALDQIIEDVSKELDIFSQFKKIKKDRILF
ILNTTDSNLIKNFARKLYLFSQLYINEQKPAIYIHCYIASIKFPKVSNNAKEIEKTLNMLLSQNNHYYYREYNSTAHDLE
NIRKSNLQLNLLRQALAKNTMRFAYQPIIDRNTMKVHYYECLLRIPYENGVYISVGPIIPIAENKGLIFVIDQIVLEMTI
NKLASNPNLMLAVNISNIGTSDEALWEIAENLLKAHNVRDRLIIEITETSFNENYDKITLFINKLRKYGCKFALDDFGSG
FTSFKQLQSLPIDIIKIDGKYVRSITSDIQSRYFVERLIKISEDLGIATVAEFVENGEIAKFLIDLKVGGLQGNFYSEAK
FDRAE

Specific function: Overexpression reduces biofilm formation [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=234, Percent_Identity=33.7606837606838, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788849, Length=231, Percent_Identity=32.034632034632, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1786507, Length=236, Percent_Identity=28.8135593220339, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=26.8292682926829, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082096, Length=235, Percent_Identity=30.2127659574468, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081921, Length=234, Percent_Identity=29.9145299145299, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787541, Length=232, Percent_Identity=29.3103448275862, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081845, Length=226, Percent_Identity=28.7610619469027, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI226510982, Length=231, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081980, Length=256, Percent_Identity=29.296875, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=27.9166666666667, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788502, Length=233, Percent_Identity=25.7510729613734, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 47025; Mature: 47025

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKMAMSELITDYKDLQDEIDKLEKGVCFACRLVNYDEIEFIEHDKHFIIEALDQIIEDV
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHEEECCHHHHHHHHHHHHHHH
SKELDIFSQFKKIKKDRILFILNTTDSNLIKNFARKLYLFSQLYINEQKPAIYIHCYIAS
HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEE
IKFPKVSNNAKEIEKTLNMLLSQNNHYYYREYNSTAHDLENIRKSNLQLNLLRQALAKNT
EECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHH
MRFAYQPIIDRNTMKVHYYECLLRIPYENGVYISVGPIIPIAENKGLIFVIDQIVLEMTI
HHHHHCCCCCCCCEEEEEEHEEEECCCCCCEEEEECCEEEEECCCCEEEEHHHHHHHHHH
NKLASNPNLMLAVNISNIGTSDEALWEIAENLLKAHNVRDRLIIEITETSFNENYDKITL
HHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
FINKLRKYGCKFALDDFGSGFTSFKQLQSLPIDIIKIDGKYVRSITSDIQSRYFVERLIK
HHHHHHHCCCCEEHHHCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
ISEDLGIATVAEFVENGEIAKFLIDLKVGGLQGNFYSEAKFDRAE
HHHCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIKMAMSELITDYKDLQDEIDKLEKGVCFACRLVNYDEIEFIEHDKHFIIEALDQIIEDV
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHEEECCHHHHHHHHHHHHHHH
SKELDIFSQFKKIKKDRILFILNTTDSNLIKNFARKLYLFSQLYINEQKPAIYIHCYIAS
HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEE
IKFPKVSNNAKEIEKTLNMLLSQNNHYYYREYNSTAHDLENIRKSNLQLNLLRQALAKNT
EECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHH
MRFAYQPIIDRNTMKVHYYECLLRIPYENGVYISVGPIIPIAENKGLIFVIDQIVLEMTI
HHHHHCCCCCCCCEEEEEEHEEEECCCCCCEEEEECCEEEEECCCCEEEEHHHHHHHHHH
NKLASNPNLMLAVNISNIGTSDEALWEIAENLLKAHNVRDRLIIEITETSFNENYDKITL
HHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
FINKLRKYGCKFALDDFGSGFTSFKQLQSLPIDIIKIDGKYVRSITSDIQSRYFVERLIK
HHHHHHHCCCCEEHHHCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
ISEDLGIATVAEFVENGEIAKFLIDLKVGGLQGNFYSEAKFDRAE
HHHCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]